fgenesh1_pm.C_scaffold_1000024 (Selaginella moellendorfii)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh1_pm.C_scaffold_1000024 T00940_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_1000024 CCCH ZF 13 39
fgenesh1_pm.C_scaffold_1000024 RRM 82 140
fgenesh1_pm.C_scaffold_1000024 CCCH ZF 149 174

Links

Other CCCH ZF,RRM family RBPs
Other Selaginella moellendorfii RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
14519 Aureococcus anophagefferens 14519 N 0.741
1600010121 Ostreococcus tauri 1600010121 N 0.733
29092.m000448 Ricinus communis 29092.m000448 N 0.884
29991.m000639 Ricinus communis 29991.m000639 N 0.808
30170.m013808 Ricinus communis 30170.m013808 N 0.875
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.857
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.857
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.848
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.875
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.848
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.839
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.830
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.893
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.893
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.902
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.893
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.884
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.884
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.884
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.830
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.848
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.848
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.893
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.823
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.875
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.750
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.767
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.839
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.866
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.821
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.920
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.702
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.741
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.839
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.748
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.866
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.857
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.857
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.875
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.839
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.902
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.875
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.754
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.857
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.857
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.857
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.786
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.848
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.911
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.920
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.768
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.902
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.848
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.875
MDP0000179037 Malus x domestica MDP0000179037 N 0.902
MDP0000284705 Malus x domestica MDP0000284705 N 0.911
MDP0000321343 Malus x domestica MDP0000321343 N 0.866
MDP0000640144 Malus x domestica MDP0000640144 N 0.902
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.736
mgf001260m Mimulus guttatus mgf001260m N 0.830
mgf001805m Mimulus guttatus mgf001805m N 0.866
mgf003009m Mimulus guttatus mgf003009m N 0.830
mgf004170m Mimulus guttatus mgf004170m N 0.830
mgf010816m Mimulus guttatus mgf010816m N 0.893
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.875
PITG_05688 Phytophthora infestans PITG_05688 N 0.750
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.774
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.864
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.866
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.902
ppa008459m Prunus persica ppa008459m N 0.902
ppa025949m Prunus persica ppa025949m N 0.911
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.866
SB03G030670 Sorghum bicolor Sb03g030670 N 0.857
SB09G028530 Sorghum bicolor Sb09g028530 N 0.857
s_458600 Phytophthora sojae s_458600 N 0.759