MDP0000906147 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000906147 T01113_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000906147 CCCH ZF 173 198
MDP0000906147 RRM 341 401

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000645 Ricinus communis 27613.m000645 N 0.793
29223.m000023 Ricinus communis 29223.m000023 N 0.770
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.782
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.828
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.828
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.874
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.816
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.759
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.713
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.713
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.759
MDP0000120462 Malus x domestica MDP0000120462 N 0.701
MDP0000214614 Malus x domestica MDP0000214614 N 0.943
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.701
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.701
mgf003557m Mimulus guttatus mgf003557m N 0.724
PK01281.1 Cannabis sativa PK01281.1 N 0.759
PK20504.1 Cannabis sativa PK20504.1 N 0.851
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.701
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.770
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.897
ppa002383m Prunus persica ppa002383m N 0.701
ppa003564m Prunus persica ppa003564m N 0.943
ppa019338m Prunus persica ppa019338m N 0.782
SB08G001980 Sorghum bicolor Sb08g001980 N 0.713