ppa002383m (Prunus persica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		ppa002383m T01124_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa002383m CCCH ZF 240 263
ppa002383m RRM 379 439

Links

Other CCCH ZF,RRM family RBPs
Other Prunus persica RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK18074.1 Cannabis sativa PK18074.1 N 0.953
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.942
MDP0000164538 Malus x domestica MDP0000164538 N 0.941
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.920
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.908
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.908
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.884
30169.m006472 Ricinus communis 30169.m006472 N 0.847
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.835
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.828
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.826
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.826
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.826
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.824
30169.m006471 Ricinus communis 30169.m006471 N 0.824
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.812
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.812
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.812
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.802
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.802
MDP0000214403 Malus x domestica MDP0000214403 N 0.802
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.802
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.802
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.800
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.800
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.800
SB02G043180 Sorghum bicolor Sb02g043180 N 0.800
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.800
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.800
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.800
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.800
MDP0000120462 Malus x domestica MDP0000120462 N 0.800
MDP0000243086 Malus x domestica MDP0000243086 N 0.800
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.800
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.800
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.800
SB01G036490 Sorghum bicolor Sb01g036490 N 0.800
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.800
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.800
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.791
MDP0000120231 Malus x domestica MDP0000120231 N 0.788
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.788
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.788
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.788
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.788
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.788
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.788
ppa023263m Prunus persica ppa023263m N 0.788
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.788
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.779
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.779
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.776
mgf000973m Mimulus guttatus mgf000973m N 0.776
ppa002413m Prunus persica ppa002413m N 0.776
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.767
mgf014647m Mimulus guttatus mgf014647m N 0.767
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.767
SB08G001980 Sorghum bicolor Sb08g001980 N 0.767
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.759
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.759
MDP0000220601 Malus x domestica MDP0000220601 N 0.756
mgf002273m Mimulus guttatus mgf002273m N 0.756
MDP0000256775 Malus x domestica MDP0000256775 N 0.733
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.733
PK20504.1 Cannabis sativa PK20504.1 N 0.733
MDP0000259773 Malus x domestica MDP0000259773 N 0.733
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.733
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.729
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.729
ppa003564m Prunus persica ppa003564m N 0.721
MDP0000214614 Malus x domestica MDP0000214614 N 0.721
SB05G001540 Sorghum bicolor Sb05g001540 N 0.721
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.709
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.706
MDP0000906147 Malus x domestica MDP0000906147 N 0.701