SB08G001980 (Sorghum bicolor)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Sb08g001980 T00767_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb08g001980.1 CCCH ZF 164 186
Sb08g001980.1 RRM 307 366

Links

Other CCCH ZF,RRM family RBPs
Other Sorghum bicolor RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.988
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.940
SB05G001540 Sorghum bicolor Sb05g001540 N 0.928
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.892
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.880
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.880
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.880
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.880
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.880
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.880
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.880
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.880
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.880
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.880
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.880
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.869
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.869
ppa023263m Prunus persica ppa023263m N 0.867
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.867
MDP0000243086 Malus x domestica MDP0000243086 N 0.867
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.867
30169.m006471 Ricinus communis 30169.m006471 N 0.857
MDP0000220601 Malus x domestica MDP0000220601 N 0.855
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.855
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.855
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.855
ppa002413m Prunus persica ppa002413m N 0.845
MDP0000120231 Malus x domestica MDP0000120231 N 0.845
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.843
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.843
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.839
MDP0000259773 Malus x domestica MDP0000259773 N 0.831
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.831
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.831
MDP0000256775 Malus x domestica MDP0000256775 N 0.831
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.831
SB01G036490 Sorghum bicolor Sb01g036490 N 0.831
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.831
mgf000973m Mimulus guttatus mgf000973m N 0.824
mgf002273m Mimulus guttatus mgf002273m N 0.824
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.821
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.821
MDP0000120462 Malus x domestica MDP0000120462 N 0.821
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.819
mgf014647m Mimulus guttatus mgf014647m N 0.819
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.819
SB02G043180 Sorghum bicolor Sb02g043180 N 0.819
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.819
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.819
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.807
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.798
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.779
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.779
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.774
ppa002383m Prunus persica ppa002383m N 0.767
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.759
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.759
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.756
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.756
30169.m006472 Ricinus communis 30169.m006472 N 0.756
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.750
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.747
PK18074.1 Cannabis sativa PK18074.1 N 0.744
MDP0000164538 Malus x domestica MDP0000164538 N 0.744
MDP0000214614 Malus x domestica MDP0000214614 N 0.741
ppa003564m Prunus persica ppa003564m N 0.741
PK20504.1 Cannabis sativa PK20504.1 N 0.729
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.726
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.714
MDP0000906147 Malus x domestica MDP0000906147 N 0.713
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.713
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.713
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.702
ppa019338m Prunus persica ppa019338m N 0.701
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.701