MDP0000120462 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000120462 T01091_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000120462 CCCH ZF 145 166
MDP0000120462 RRM 290 350

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000120231 Malus x domestica MDP0000120231 N 0.964
ppa002413m Prunus persica ppa002413m N 0.952
30169.m006471 Ricinus communis 30169.m006471 N 0.916
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.905
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.893
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.893
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.892
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.880
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.880
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.880
SB02G043180 Sorghum bicolor Sb02g043180 N 0.880
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.880
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.880
ppa023263m Prunus persica ppa023263m N 0.880
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.869
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.869
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.869
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.867
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.867
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.867
MDP0000243086 Malus x domestica MDP0000243086 N 0.867
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.867
SB01G036490 Sorghum bicolor Sb01g036490 N 0.867
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.867
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.867
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.867
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.867
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.867
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.867
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.867
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.862
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.855
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.845
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.843
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.843
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.843
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.843
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.843
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.821
mgf014647m Mimulus guttatus mgf014647m N 0.821
SB08G001980 Sorghum bicolor Sb08g001980 N 0.821
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.821
MDP0000220601 Malus x domestica MDP0000220601 N 0.821
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.814
mgf002273m Mimulus guttatus mgf002273m N 0.812
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.810
ppa002383m Prunus persica ppa002383m N 0.800
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.798
SB05G001540 Sorghum bicolor Sb05g001540 N 0.798
MDP0000256775 Malus x domestica MDP0000256775 N 0.798
mgf000973m Mimulus guttatus mgf000973m N 0.798
MDP0000259773 Malus x domestica MDP0000259773 N 0.798
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
MDP0000164538 Malus x domestica MDP0000164538 N 0.788
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.786
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.782
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.782
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.782
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
PK18074.1 Cannabis sativa PK18074.1 N 0.776
30169.m006472 Ricinus communis 30169.m006472 N 0.765
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.747
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.744
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.744
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.741
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.738
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.735
ppa003564m Prunus persica ppa003564m N 0.729
MDP0000214614 Malus x domestica MDP0000214614 N 0.729
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.723
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.723
PK20504.1 Cannabis sativa PK20504.1 N 0.718
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.714
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.711
MDP0000906147 Malus x domestica MDP0000906147 N 0.701