CBN11546 (Caenorhabditis brenneri)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 CBN11546 T02142_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
CBN11546 CCCH ZF 90 115

Links

Other CCCH ZF family RBPs
Other Caenorhabditis brenneri RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000635 Ricinus communis 27613.m000635 N 0.000
29608.m000212 Ricinus communis 29608.m000212 N 0.000
30048.m000319 Ricinus communis 30048.m000319 N 0.000
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.000
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.000
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.000
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.000
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.000
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.000
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.000
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.000
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.000
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.000
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.000
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.000
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.000
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.000
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.000
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.000
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.000
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.000
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.000
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.000
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.000
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.000
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.000
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.000
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.000
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.000
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.000
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.000
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.000
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.000
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.000
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.000
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.000
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.000
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.000
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.000
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.000
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.000
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.000
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.000
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.000
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.000
MDP0000188788 Malus x domestica MDP0000188788 N 0.000
MDP0000204698 Malus x domestica MDP0000204698 N 0.000
MDP0000320618 Malus x domestica MDP0000320618 N 0.000
MDP0000609551 Malus x domestica MDP0000609551 N 0.000
MDP0000642684 Malus x domestica MDP0000642684 N 0.000
MDP0000907782 Malus x domestica MDP0000907782 N 0.000
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.000
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.000
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.000
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.000
mgf004139m Mimulus guttatus mgf004139m N 0.000
mgf009385m Mimulus guttatus mgf009385m N 0.000
mgf009486m Mimulus guttatus mgf009486m N 0.000
mgf012147m Mimulus guttatus mgf012147m N 0.000
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.000
PK13457.1 Cannabis sativa PK13457.1 N 0.000
PK25912.1 Cannabis sativa PK25912.1 N 0.000
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.000
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.000
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.000
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.000
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.000
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.000
ppa004834m Prunus persica ppa004834m N 0.000
ppa005119m Prunus persica ppa005119m N 0.000
ppa005122m Prunus persica ppa005122m N 0.000
ppa005132m Prunus persica ppa005132m N 0.000
SB02G005620 Sorghum bicolor Sb02g005620 N 0.000
SB02G005670 Sorghum bicolor Sb02g005670 N 0.000
SB02G037690 Sorghum bicolor Sb02g037690 N 0.000
SB05G025410 Sorghum bicolor Sb05g025410 N 0.000