MBNL3_FUGRU (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000012666 T03540_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.849
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.849
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000032077 CCCH ZF 16 40
ENSTRUP00000032077 CCCH ZF 57 72
ENSTRUP00000032077 CCCH ZF 178 204
ENSTRUP00000032077 CCCH ZF 216 238
ENSTRUP00000032078 CCCH ZF 19 43
ENSTRUP00000032078 CCCH ZF 60 75
ENSTRUP00000032078 CCCH ZF 181 207
ENSTRUP00000032078 CCCH ZF 219 241
ENSTRUP00000032079 CCCH ZF 16 40
ENSTRUP00000032079 CCCH ZF 57 72
ENSTRUP00000032079 CCCH ZF 178 204
ENSTRUP00000032079 CCCH ZF 216 238
ENSTRUP00000032080 CCCH ZF 16 40
ENSTRUP00000032080 CCCH ZF 57 72
ENSTRUP00000032080 CCCH ZF 178 204
ENSTRUP00000032080 CCCH ZF 216 238
ENSTRUP00000032081 CCCH ZF 19 43
ENSTRUP00000032081 CCCH ZF 60 75
ENSTRUP00000032081 CCCH ZF 181 207
ENSTRUP00000032081 CCCH ZF 219 241

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
90208 Helobdella robusta 90208 I 0.000
AAB09041 Xenopus laevis AAB09041 N 0.000
AAC41243 Xenopus laevis AAC41243 N 0.000
AAEL000695 Aedes aegypti AAEL000695 I 0.000
AAEL014033 Aedes aegypti AAEL014033 I 0.000
AAH45035 Xenopus laevis AAH45035 N 0.000
AAH57743 Xenopus laevis AAH57743 N 0.000
AAH70706 Xenopus laevis AAH70706 N 0.000
AAI08575 Xenopus laevis AAI08575 N 0.000
ACH69783 Xenopus laevis ACH69783 N 0.000
AGAP004950 Anopheles gambiae AGAP004950 I 0.000
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.000
Ame_R009875 Ailuropoda melanoleuca Ame_R009875 N 0.000
Ame_R017712 Ailuropoda melanoleuca Ame_R017712 N 0.000
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.000
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.000
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.000
DGIL_AUG5s6024g1t1 Acyrtosiphon pisum DGIL_AUG5s6024g1t1 N 0.000
CELF1 Anolis carolinensis ENSACAG00000002114 N 0.000
CELF2 Anolis carolinensis ENSACAG00000007661 N 0.000
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.000
A7MB95_BOVIN Bos taurus ENSBTAG00000002520 N 0.000
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.000
CELF2 Canis familiaris ENSCAFG00000004973 N 0.000
CELF1 Canis familiaris ENSCAFG00000008452 N 0.000
CELF2 Choloepus hoffmanni ENSCHOG00000002945 N 0.000
CELF1 Choloepus hoffmanni ENSCHOG00000004196 N 0.000
ENSCING00000003762 Ciona intestinalis ENSCING00000003762 N 0.000
LOC100392717 Callithrix jacchus ENSCJAG00000020133 N 0.000
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.000
CELF1 Cavia porcellus ENSCPOG00000007871 N 0.000
CELF2 Cavia porcellus ENSCPOG00000012567 N 0.000
celf2 Danio rerio ENSDARG00000002131 N 0.000
celf1 Danio rerio ENSDARG00000005315 N 0.000
CELF1 Dasypus novemcinctus ENSDNOG00000009523 N 0.000
Celf2 Dipodomys ordii ENSDORG00000006455 N 0.000
Celf1 Dipodomys ordii ENSDORG00000013721 N 0.000
CELF2 Equus caballus ENSECAG00000006649 N 0.000
CELF1 Equus caballus ENSECAG00000007741 N 0.000
CELF2 Erinaceus europaeus ENSEEUG00000005658 N 0.000
CELF1 Erinaceus europaeus ENSEEUG00000009782 N 0.000
CELF2 Echinops telfairi ENSETEG00000008414 N 0.000
CELF2 Homo sapiens ENSG00000048740 N 0.000
CELF1 Homo sapiens ENSG00000149187 N 0.000
CELF2 Gasterosteus aculeatus ENSGACG00000004426 N 0.000
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.000
CELF1 Gasterosteus aculeatus ENSGACG00000014226 N 0.000
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.000
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.000
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.000
CELF2_CHICK Gallus gallus ENSGALG00000006713 N 0.000
CELF1_CHICK Gallus gallus ENSGALG00000008097 N 0.000
CELF1 Gorilla gorilla ENSGGOG00000004106 N 0.000
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.000
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.000
CELF1 Loxodonta africana ENSLAFG00000003484 N 0.000
CELF2 Loxodonta africana ENSLAFG00000013612 N 0.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.000
CELF1 Macropus eugenii ENSMEUG00000007763 N 0.000
CELF2 Macropus eugenii ENSMEUG00000015276 N 0.000
CELF2 Meleagris gallopavo ENSMGAG00000004551 N 0.000
CELF1 Meleagris gallopavo ENSMGAG00000010629 N 0.000
CELF1 Microcebus murinus ENSMICG00000007157 N 0.000
CELF2 Microcebus murinus ENSMICG00000007867 N 0.000
CELF1 Myotis lucifugus ENSMLUG00000016631 N 0.000
CELF2 Macaca mulatta ENSMMUG00000011468 N 0.000
CELF1 Macaca mulatta ENSMMUG00000011657 N 0.000
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.000
CELF2 Monodelphis domestica ENSMODG00000016763 N 0.000
CELF1 Monodelphis domestica ENSMODG00000019913 N 0.000
Celf2 Mus musculus ENSMUSG00000002107 N 0.000
Celf1 Mus musculus ENSMUSG00000005506 N 0.000
CELF1 Ornithorhynchus anatinus ENSOANG00000007896 N 0.000
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.000
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.000
CELF1 Oryctolagus cuniculus ENSOCUG00000001311 N 0.000
CELF2 Oryctolagus cuniculus ENSOCUG00000004961 N 0.000
CELF1 Ochotona princeps ENSOPRG00000003239 N 0.000
CELF2 Ochotona princeps ENSOPRG00000011502 N 0.000
CELF2 Oryzias latipes ENSORLG00000003894 N 0.000
CELF6 Oryzias latipes ENSORLG00000013392 I 0.000
CELF2 Oryzias latipes ENSORLG00000017111 N 0.000
CELF1 Procavia capensis ENSPCAG00000002631 N 0.000
CELF2 Procavia capensis ENSPCAG00000010882 N 0.000
ENSPPYG00000002083 Pongo pygmaeus ENSPPYG00000002083 N 0.000
ENSPPYG00000003302 Pongo pygmaeus ENSPPYG00000003302 N 0.000
CELF2 Pan troglodytes ENSPTRG00000002284 N 0.000
CELF1 Pan troglodytes ENSPTRG00000003568 N 0.000
CELF1 Pteropus vampyrus ENSPVAG00000007340 N 0.000
Cugbp1 Rattus norvegicus ENSRNOG00000010379 N 0.000
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.000
Cugbp2 Rattus norvegicus ENSRNOG00000023661 N 0.000
CELF1 Sorex araneus ENSSARG00000003207 N 0.000
CELF2 Sus scrofa ENSSSCG00000011121 N 0.000
CELF1 Tupaia belangeri ENSTBEG00000005140 N 0.000
CELF2 Tupaia belangeri ENSTBEG00000007939 N 0.000
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.000
CUGBP2-1 Taeniopygia guttata ENSTGUG00000002136 N 0.000
CUGBP1 Taeniopygia guttata ENSTGUG00000010377 N 0.000
CELF2 Tetraodon nigroviridis ENSTNIG00000007201 N 0.000
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.000
CELF2 Tetraodon nigroviridis ENSTNIG00000016009 N 0.000
CELF1 Takifugu rubripes ENSTRUG00000000617 N 0.000
CELF1 Takifugu rubripes ENSTRUG00000001711 N 0.000
CELF2 Takifugu rubripes ENSTRUG00000010147 N 0.000
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.000
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.000
CELF2 Takifugu rubripes ENSTRUG00000016905 N 0.000
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.000
CELF1 Tarsius syrichta ENSTSYG00000003866 N 0.000
CELF2 Tarsius syrichta ENSTSYG00000005118 N 0.000
CELF1 Tursiops truncatus ENSTTRG00000014157 N 0.000
CELF2 Tursiops truncatus ENSTTRG00000014665 N 0.000
CELF1 Vicugna pacos ENSVPAG00000000336 N 0.000
CELF2 Vicugna pacos ENSVPAG00000009360 N 0.000
celf1 Xenopus tropicalis ENSXETG00000009044 N 0.000
celf2 Xenopus tropicalis ENSXETG00000021992 N 0.000
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.000
e_gw.91.28.1 Branchiostoma floridae e_gw.91.28.1 I 0.000
e_gw1.172.82.1 Capitella teleta e_gw1.172.82.1 I 0.000
GF10965 Drosophila ananassae FBgn0088005 I 0.000
GG13757 Drosophila erecta FBgn0106020 I 0.000
GH14684 Drosophila grimshawi FBgn0122160 I 0.000
GI13095 Drosophila mojavensis FBgn0135852 I 0.000
GL21647 Drosophila persimilis FBgn0159240 I 0.000
GM24582 Drosophila sechellia FBgn0179445 I 0.000
GD12651 Drosophila simulans FBgn0184378 I 0.000
GJ13842 Drosophila virilis FBgn0201061 I 0.000
GK17101 Drosophila willistoni FBgn0219100 I 0.000
GE20053 Drosophila yakuba FBgn0237378 I 0.000
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.000
bru-3 Drosophila melanogaster FBgn0262350 D 0.000
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.000
LOAG_05508 Loa loa LOAG_05508 I 0.000
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.000
O57406 Xenopus laevis O57406 N 0.000
PHUM315130 Pediculus humanus PHUM315130 I 0.000
Q6PF35 Xenopus laevis Q6PF35 N 0.000
Q7ZXE2 Xenopus laevis Q7ZXE2 N 0.000
Smp_041280 Schistosoma mansoni Smp_041280 I 0.000