ENSTNIG00000013977 (Tetraodon nigroviridis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTNIG00000013977 T03496_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.849
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.849
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001951 CCCH ZF 16 40
ENSTNIP00000001951 CCCH ZF 57 72
ENSTNIP00000001951 CCCH ZF 174 200
ENSTNIP00000001951 CCCH ZF 212 234
ENSTNIP00000016984 CCCH ZF 16 40
ENSTNIP00000016984 CCCH ZF 57 72
ENSTNIP00000016984 CCCH ZF 178 204
ENSTNIP00000016984 CCCH ZF 216 238

Links

Other CCCH ZF family RBPs
Other Tetraodon nigroviridis RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.978
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.956
mbnl2 Danio rerio ENSDARG00000018460 I 0.945
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.945
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.945
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.934
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.924
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.923
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.923
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.923
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.923
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.923
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.923
MBNL2 Homo sapiens ENSG00000139793 I 0.923
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.923
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.923
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.923
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.923
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.923
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.923
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.923
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.923
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.923
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.923
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.923
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.923
MBNL2 Sorex araneus ENSSARG00000002868 I 0.923
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.913
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.912
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.912
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.912
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.912
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.912
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.912
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.912
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.912
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.901
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.890
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.879
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.870
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.859
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.859
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.859
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.859
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.859
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.859
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.859
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.859
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.859
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.859
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.859
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.859
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.859
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.859
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.859
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.859
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.859
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.859
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.859
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.859
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.859
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.859
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.859
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.859
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.859
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.859
MBNL1 Homo sapiens ENSG00000152601 D 0.859
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.859
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.859
LOC100050018 Equus caballus ENSECAG00000024349 I 0.859
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.859
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.859
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.859
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.859
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.859
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.857
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.848
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.848
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.848
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.848
LOC100054316 Equus caballus ENSECAG00000021076 I 0.848
MBNL3 Homo sapiens ENSG00000076770 I 0.848
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.848
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.848
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.848
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.848
MBNL3 Bos taurus ENSBTAG00000014088 I 0.848
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.848
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.848
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.848
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.848
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.848
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.846
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.846
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.846
MBNL3 Sorex araneus ENSSARG00000006397 I 0.837
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.837
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.837
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.837
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.837
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.826
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.826
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.826
mbnl3 Danio rerio ENSDARG00000016085 I 0.824
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.815
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.802
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.793
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.773
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.772
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.768
MBNL1 Ornithorhynchus anatinus ENSOANG00000007992 I 0.719