MBNL1 (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000013858 T03544_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.913
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.913
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000035436 CCCH ZF 27 51
ENSTRUP00000035436 CCCH ZF 68 83
ENSTRUP00000035436 CCCH ZF 198 224
ENSTRUP00000035436 CCCH ZF 235 258
ENSTRUP00000035437 CCCH ZF 19 43
ENSTRUP00000035437 CCCH ZF 60 75
ENSTRUP00000035437 CCCH ZF 190 216
ENSTRUP00000035437 CCCH ZF 227 250
ENSTRUP00000035438 CCCH ZF 16 40
ENSTRUP00000035438 CCCH ZF 57 72
ENSTRUP00000035438 CCCH ZF 187 213
ENSTRUP00000035438 CCCH ZF 224 247
ENSTRUP00000035439 CCCH ZF 16 40
ENSTRUP00000035439 CCCH ZF 57 72
ENSTRUP00000035439 CCCH ZF 116 138
ENSTRUP00000035439 CCCH ZF 149 172
ENSTRUP00000035440 CCCH ZF 16 40
ENSTRUP00000035440 CCCH ZF 57 72
ENSTRUP00000035440 CCCH ZF 187 213
ENSTRUP00000035440 CCCH ZF 224 247
ENSTRUP00000035441 CCCH ZF 16 40
ENSTRUP00000035441 CCCH ZF 57 72
ENSTRUP00000035441 CCCH ZF 187 213
ENSTRUP00000035441 CCCH ZF 224 247

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 1.000
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.946
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.935
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.924
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.924
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.924
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.913
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.913
MBNL1 Homo sapiens ENSG00000152601 D 0.913
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.913
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.913
LOC100050018 Equus caballus ENSECAG00000024349 I 0.913
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.913
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.913
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.913
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.913
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.913
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.913
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.913
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.913
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.913
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.913
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.913
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.913
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.913
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.913
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.913
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.913
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.913
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.913
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.902
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.891
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.889
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.880
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.880
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.880
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.880
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.880
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.880
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.880
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.880
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.870
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.870
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.870
LOC100054316 Equus caballus ENSECAG00000021076 I 0.870
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.870
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.870
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.870
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.870
MBNL3 Bos taurus ENSBTAG00000014088 I 0.870
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.870
MBNL3 Homo sapiens ENSG00000076770 I 0.870
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.870
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.870
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.859
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.859
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.859
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.859
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.859
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.859
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.859
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.859
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.859
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.859
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.859
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.859
MBNL3 Sorex araneus ENSSARG00000006397 I 0.859
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.859
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.859
MBNL2 Sorex araneus ENSSARG00000002868 I 0.859
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.859
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.859
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.859
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.859
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.859
MBNL2 Homo sapiens ENSG00000139793 I 0.859
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.859
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.859
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.848
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.848
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.848
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.848
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.848
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.848
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.848
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.848
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.848
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.848
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.848
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.848
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.844
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.844
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.837
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.837
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.837
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.837
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.837
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.837
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.837
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.837
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.837
mbnl2 Danio rerio ENSDARG00000018460 I 0.837
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.833
mbnl3 Danio rerio ENSDARG00000016085 I 0.826
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.826
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.822
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.815
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.814
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.796
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.779
MBNL1 Ornithorhynchus anatinus ENSOANG00000007992 I 0.750
e_gw1.156.36.1 Lottia gigantea e_gw1.156.36.1 N 0.705