MBNL3_FUGRU (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000012666 T03540_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.849
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.849
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000032077 CCCH ZF 16 40
ENSTRUP00000032077 CCCH ZF 57 72
ENSTRUP00000032077 CCCH ZF 178 204
ENSTRUP00000032077 CCCH ZF 216 238
ENSTRUP00000032078 CCCH ZF 19 43
ENSTRUP00000032078 CCCH ZF 60 75
ENSTRUP00000032078 CCCH ZF 181 207
ENSTRUP00000032078 CCCH ZF 219 241
ENSTRUP00000032079 CCCH ZF 16 40
ENSTRUP00000032079 CCCH ZF 57 72
ENSTRUP00000032079 CCCH ZF 178 204
ENSTRUP00000032079 CCCH ZF 216 238
ENSTRUP00000032080 CCCH ZF 16 40
ENSTRUP00000032080 CCCH ZF 57 72
ENSTRUP00000032080 CCCH ZF 178 204
ENSTRUP00000032080 CCCH ZF 216 238
ENSTRUP00000032081 CCCH ZF 19 43
ENSTRUP00000032081 CCCH ZF 60 75
ENSTRUP00000032081 CCCH ZF 181 207
ENSTRUP00000032081 CCCH ZF 219 241

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.989
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.989
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.946
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.946
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.946
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.946
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.946
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.946
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.946
mbnl3 Danio rerio ENSDARG00000016085 I 0.945
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.935
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.923
MBNL3 Homo sapiens ENSG00000076770 I 0.902
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.902
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.902
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.902
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.902
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.902
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.902
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.891
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.891
MBNL3 Bos taurus ENSBTAG00000014088 I 0.891
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.891
LOC100054316 Equus caballus ENSECAG00000021076 I 0.891
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.891
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.891
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.891
MBNL3 Sorex araneus ENSSARG00000006397 I 0.891
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.891
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.890
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.890
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.890
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.890
mbnl2 Danio rerio ENSDARG00000018460 I 0.890
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.890
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.890
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.880
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.880
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.879
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.879
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.879
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.879
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.879
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.879
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.879
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.879
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.879
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.879
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.879
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.879
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.879
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.879
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.879
MBNL2 Sorex araneus ENSSARG00000002868 I 0.879
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.879
MBNL2 Homo sapiens ENSG00000139793 I 0.879
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.879
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.879
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.879
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.879
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.870
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.870
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.870
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.870
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.870
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.870
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.870
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.870
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.870
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.870
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.870
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.870
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.870
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.870
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.870
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.870
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.870
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.870
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.870
MBNL1 Homo sapiens ENSG00000152601 D 0.870
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.870
LOC100050018 Equus caballus ENSECAG00000024349 I 0.870
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.870
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.870
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.870
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.870
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.870
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.870
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.868
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.868
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.868
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.868
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.859
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.859
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.859
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.859
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.859
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.857
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.857
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.848
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.846
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.845
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.837
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.837
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.837
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.835
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.835
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.832
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.813
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.793
e_gw1.156.36.1 Lottia gigantea e_gw1.156.36.1 N 0.723