mbnl3 (Danio rerio)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSDARG00000016085 T02437_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.839
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.839
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000010629 CCCH ZF 16 40
ENSDARP00000010629 CCCH ZF 57 72
ENSDARP00000010629 CCCH ZF 177 203
ENSDARP00000010629 CCCH ZF 215 237
ENSDARP00000100484 CCCH ZF 16 40
ENSDARP00000100484 CCCH ZF 57 72
ENSDARP00000100484 CCCH ZF 177 203
ENSDARP00000100484 CCCH ZF 215 237
ENSDARP00000101753 CCCH ZF 16 40
ENSDARP00000101753 CCCH ZF 57 72
ENSDARP00000101753 CCCH ZF 177 203
ENSDARP00000101753 CCCH ZF 215 237
ENSDARP00000102821 CCCH ZF 16 40
ENSDARP00000102821 CCCH ZF 57 72
ENSDARP00000102821 CCCH ZF 177 203
ENSDARP00000102821 CCCH ZF 215 237

Links

Other CCCH ZF family RBPs
Other Danio rerio RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.956
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.945
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.945
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.924
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.924
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.924
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.924
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.924
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.924
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.924
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.924
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.891
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.890
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.880
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.880
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.880
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.880
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.880
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.880
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.880
MBNL3 Homo sapiens ENSG00000076770 I 0.880
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.879
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.879
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.879
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.879
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.870
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.870
MBNL3 Sorex araneus ENSSARG00000006397 I 0.870
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.870
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.870
LOC100054316 Equus caballus ENSECAG00000021076 I 0.870
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.870
MBNL3 Bos taurus ENSBTAG00000014088 I 0.870
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.868
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.868
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.868
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.868
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.868
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.868
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.868
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.868
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.868
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.868
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.868
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.868
MBNL2 Sorex araneus ENSSARG00000002868 I 0.868
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.868
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.868
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.868
MBNL2 Homo sapiens ENSG00000139793 I 0.868
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.868
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.868
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.868
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.868
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.868
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.868
mbnl2 Danio rerio ENSDARG00000018460 I 0.868
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.859
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.859
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.859
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.859
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.859
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.859
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.859
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.859
MBNL1 Homo sapiens ENSG00000152601 D 0.859
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.859
LOC100050018 Equus caballus ENSECAG00000024349 I 0.859
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.859
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.859
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.859
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.859
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.859
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.859
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.859
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.859
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.859
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.859
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.859
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.859
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.859
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.859
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.859
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.859
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.859
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.859
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.857
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.857
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.857
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.857
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.857
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.848
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.848
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.848
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.848
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.848
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.846
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.837
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.835
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.826
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.826
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.826
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.826
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.824
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.824
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.824
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.814
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.811
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.802
XP_001194015.1 Strongylocentrotus purpuratus XP_001194015.1 I 0.761
e_gw1.156.36.1 Lottia gigantea e_gw1.156.36.1 N 0.702