XM_002871484.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_kg.6__1236__AT5G12850.1 T03853_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__1236__AT5G12850.1 CCCH ZF 301 323

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29681.m001358 Ricinus communis 29681.m001358 N 0.783
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.783
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.826
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.783
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 1.000
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.739
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.708
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.826
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.708
BRADI4G06290 Brachypodium distachyon BRADI4G06290 N 0.708
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.739
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 0.783
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 0.783
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 0.783
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.826
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.739
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.739
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.739
estExt_fgenesh1_pg.C_Chr_04.00010028 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010028 N 0.739
estExt_fgenesh1_pg.C_Chr_40023 Ostreococcus lucimarinus estExt_fgenesh1_pg.C_Chr_40023 N 0.739
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.783
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.739
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.739
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.739
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.739
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.739
GRMZM2G027298 Zea mays GRMZM2G027298 N 0.708
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 0.783
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.739
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.739
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.708
LOC_Os12g33090 Oryza sativa LOC_Os12g33090 N 0.708
MDP0000196475 Malus x domestica MDP0000196475 N 0.739
MDP0000320891 Malus x domestica MDP0000320891 N 0.826
MDP0000588193 Malus x domestica MDP0000588193 N 0.783
MDP0000673185 Malus x domestica MDP0000673185 N 0.826
MDP0000678327 Malus x domestica MDP0000678327 N 0.783
MDP0000699611 Malus x domestica MDP0000699611 N 0.739
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.783
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.783
mgf009145m Mimulus guttatus mgf009145m N 0.826
mgf012825m Mimulus guttatus mgf012825m N 0.826
PK05226.1 Cannabis sativa PK05226.1 N 0.783
PK15838.1 Cannabis sativa PK15838.1 N 0.783
PK25575.1 Cannabis sativa PK25575.1 N 0.783
B9GIG9_POPTR Populus trichocarpa POPTR_0001s25960 N 0.783
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.739
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 0.783
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.739
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.739
ppa002251m Prunus persica ppa002251m N 0.739
ppa002415m Prunus persica ppa002415m N 0.783
SB08G016640 Sorghum bicolor Sb08g016640 N 0.708