XM_002864797.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_kg.8__2325__AT5G63260.1 T03863_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__2325__AT5G63260.1 CCCH ZF 101 127
fgenesh2_kg.8__2325__AT5G63260.1 CCCH ZF 148 174
fgenesh2_kg.8__2325__AT5G63260.1 CCCH ZF 194 220
fgenesh2_kg.8__2325__AT5G63260.1 CCCH ZF 334 360
fgenesh2_kg.8__2325__AT5G63260.1 CCCH ZF 380 406

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013813 Ricinus communis 30147.m013813 N 0.733
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.822
AT5G63260 Arabidopsis thaliana AT5G63260-TAIR-G N 0.985
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.711
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.711
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.719
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.704
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.741
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.704
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.711
PK26637.1 Cannabis sativa PK26637.1 N 0.711
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.719
ppa004690m Prunus persica ppa004690m N 0.726
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.822