LjSGA_006961.1 (Lotus japonicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LjSGA_006961.1 T06260_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_006961.1 CCCH ZF 179 205
LjSGA_006961.1 CCCH ZF 228 252
LjSGA_006961.1 CCCH ZF 270 296
LjSGA_006961.1 CCCH ZF 401 427
LjSGA_006961.1 CCCH ZF 447 473

Links

Other CCCH ZF family RBPs
Other Lotus japonicus RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.873
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.852
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.852
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.827
PK26637.1 Cannabis sativa PK26637.1 N 0.815
30147.m013813 Ricinus communis 30147.m013813 N 0.800
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.789
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.785
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.776
ppa004690m Prunus persica ppa004690m N 0.770
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.741
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.722
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.714
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.707
mgf013764m Mimulus guttatus mgf013764m N 0.704
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.704