B9I3K6_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0012s09400 T04061_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s09400.1 CCCH ZF 127 153
POPTR_0012s09400.1 CCCH ZF 180 203
POPTR_0012s09400.1 CCCH ZF 230 256
POPTR_0012s09400.1 CCCH ZF 366 392
POPTR_0012s09400.1 CCCH ZF 412 438

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013813 Ricinus communis 30147.m013813 N 0.807
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.780
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.778
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.774
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.773
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.763
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.754
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.754
PK26637.1 Cannabis sativa PK26637.1 N 0.748
ppa004690m Prunus persica ppa004690m N 0.748
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.748
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.742
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.726
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.719
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.714
AT5G63260 Arabidopsis thaliana AT5G63260-TAIR-G N 0.704