cassava531.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava531.valid.m1 T04812_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava531.valid.m1 CCCH ZF 142 168
cassava531.valid.m1 CCCH ZF 189 215
cassava531.valid.m1 CCCH ZF 243 268
cassava531.valid.m1 CCCH ZF 377 403
cassava531.valid.m1 CCCH ZF 423 449

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013813 Ricinus communis 30147.m013813 N 0.926
PK26637.1 Cannabis sativa PK26637.1 N 0.813
ppa004690m Prunus persica ppa004690m N 0.807
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.807
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.778
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.776
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.770
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.763
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.756
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.756
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.748
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.741
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.741
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.739
GSVIVG00003977001 Vitis vinifera GSVIVG00003977001 N 0.724
AT5G63260 Arabidopsis thaliana AT5G63260-TAIR-G N 0.711
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.711