Cucsa.391690 (Cucumis sativus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Cucsa.391690 T04856_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.391690.1 CCCH ZF 140 166
Cucsa.391690.1 CCCH ZF 188 213
Cucsa.391690.1 CCCH ZF 233 259
Cucsa.391690.1 CCCH ZF 359 385
Cucsa.391690.1 CCCH ZF 405 431
Cucsa.391690.2 CCCH ZF 140 166
Cucsa.391690.2 CCCH ZF 188 213
Cucsa.391690.2 CCCH ZF 233 259
Cucsa.391690.2 CCCH ZF 351 377

Links

Other CCCH ZF family RBPs
Other Cucumis sativus RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.837
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.836
30147.m013813 Ricinus communis 30147.m013813 N 0.822
PK26637.1 Cannabis sativa PK26637.1 N 0.822
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.799
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.793
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.785
ppa004690m Prunus persica ppa004690m N 0.778
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.776
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.763
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.754
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.754
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.748
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.739
AT5G63260 Arabidopsis thaliana AT5G63260-TAIR-G N 0.711
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.711