Glyma17g13580.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma17g13580.1 T05464_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma17g13580.1 CCCH ZF 154 180
Glyma17g13580.1 CCCH ZF 201 227
Glyma17g13580.1 CCCH ZF 249 275
Glyma17g13580.1 CCCH ZF 387 413
Glyma17g13580.1 CCCH ZF 433 459

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.970
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.896
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.852
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.852
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.822
PK26637.1 Cannabis sativa PK26637.1 N 0.815
30147.m013813 Ricinus communis 30147.m013813 N 0.807
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.785
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.785
ppa004690m Prunus persica ppa004690m N 0.778
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.748
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.748
mgf013764m Mimulus guttatus mgf013764m N 0.726
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.704
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.704
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.704