Glyma05g02920.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma05g02920.1 T05401_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma05g02920.1 CCCH ZF 144 170
Glyma05g02920.1 CCCH ZF 191 217
Glyma05g02920.1 CCCH ZF 239 265
Glyma05g02920.1 CCCH ZF 377 403
Glyma05g02920.1 CCCH ZF 423 449

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.970
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.911
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.852
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.852
PK26637.1 Cannabis sativa PK26637.1 N 0.830
30147.m013813 Ricinus communis 30147.m013813 N 0.822
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.822
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.793
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.785
ppa004690m Prunus persica ppa004690m N 0.770
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.763
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.756
mgf013764m Mimulus guttatus mgf013764m N 0.741
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.719
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.719
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.719
AT5G63260 Arabidopsis thaliana AT5G63260-TAIR-G N 0.711