GSVIVG00007563001 (Vitis vinifera)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GSVIVG00007563001 T03867_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00007563001 CCCH ZF 130 156
GSVIVT00007563001 CCCH ZF 179 205
GSVIVT00007563001 CCCH ZF 225 251
GSVIVT00007563001 CCCH ZF 366 392
GSVIVT00007563001 CCCH ZF 412 438

Links

Other CCCH ZF family RBPs
Other Vitis vinifera RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK26637.1 Cannabis sativa PK26637.1 N 0.874
30147.m013813 Ricinus communis 30147.m013813 N 0.844
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.837
ppa004690m Prunus persica ppa004690m N 0.822
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.815
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.807
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.785
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.785
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.785
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.785
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.770
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.763
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.748
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.741
AT5G63260 Arabidopsis thaliana AT5G63260-TAIR-G N 0.733
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.726
GSVIVG00003977001 Vitis vinifera GSVIVG00003977001 N 0.711
mgf013764m Mimulus guttatus mgf013764m N 0.711