XM_002874266.1 (Arabidopsis lyrata)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pm.C_scaffold_6002106 T10644_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6002106 CCHC ZF 727 744

Links

Other CCHC ZF family RBPs
Other Arabidopsis lyrata RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009003 Ricinus communis 30128.m009003 N 0.778
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 1.000
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.722
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.722
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.722
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.722
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.722
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.722
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.778
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.722
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.722
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.722
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.000
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.722
mgf008200m Mimulus guttatus mgf008200m N 0.000
mgf012653m Mimulus guttatus mgf012653m N 0.000
PK16552.1 Cannabis sativa PK16552.1 N 0.722
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.722
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.722
ppa001778m Prunus persica ppa001778m N 0.722
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.722