CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os02g19840
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g19840
T10898_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g19840.1
CCHC ZF
228
245
GPCFNCGKHGHFAGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
226 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
185682
Helobdella robusta
185682
I
0.000
AAA60936
Xenopus laevis
AAA60936
I
0.000
AAEL010318
Aedes aegypti
AAEL010318
I
0.000
AAH52100
Xenopus laevis
AAH52100
I
0.000
AAH72110
Xenopus laevis
AAH72110
I
0.000
AAH73435
Xenopus laevis
AAH73435
I
0.000
AAI08463
Xenopus laevis
AAI08463
I
0.000
AGAP011092
Anopheles gambiae
AGAP011092
I
0.000
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.000
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.000
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.000
BDE_estExt_fgenesh1_pg.C_380037
Daphnia pulex
BDE_estExt_fgenesh1_pg.C_380037
I
0.000
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.000
Bm1_06880
Brugia malayi
Bm1_06880
I
0.000
Bm1_16080
Brugia malayi
Bm1_16080
I
0.000
CAA40721
Xenopus laevis
CAA40721
I
0.000
CBG02207
Caenorhabditis briggsae
CBG02207
N
0.000
CBN04295
Caenorhabditis brenneri
CBN04295
I
0.000
CJA17800
Caenorhabditis japonica
CJA17800
N
0.000
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.000
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.000
DGIL_AUG5s1591g1t1
Acyrtosiphon pisum
DGIL_AUG5s1591g1t1
I
0.000
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.000
DGIL_AUG5s9152g1t1
Acyrtosiphon pisum
DGIL_AUG5s9152g1t1
I
0.000
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.000
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.000
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.000
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.000
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.000
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.000
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.000
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.000
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.000
pabpc4
Danio rerio
ENSDARG00000059259
I
0.000
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.000
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.000
PABPC1
Homo sapiens
ENSG00000070756
D
0.000
PABPC4
Homo sapiens
ENSG00000090621
D
0.000
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.000
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.000
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.000
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.000
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.000
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.000
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.000
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.000
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.000
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.000
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.000
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.000
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.000
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.000
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.000
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.000
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.000
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.000
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.000
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.000
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.000
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.000
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.000
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.000
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.000
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.000
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.000
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.000
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.000
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.000
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.000
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.000
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.000
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.000
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.000
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.000
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.000
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.000
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.000
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.000
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.000
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.000
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.000
estExt_Genewise1.C_sca_1150143
Lottia gigantea
estExt_Genewise1.C_sca_1150143
I
0.000
e_gw.313.40.1
Branchiostoma floridae
e_gw.313.40.1
I
0.000
e_gw1.115.135.1
Lottia gigantea
e_gw1.115.135.1
I
0.000
GA18673-RA
Drosophila pseudoobscura
FBgn0078673
I
0.000
GF12652
Drosophila ananassae
FBgn0089688
I
0.000
GG21846
Drosophila erecta
FBgn0114024
I
0.000
GH21052
Drosophila grimshawi
FBgn0128514
I
0.000
GI18654
Drosophila mojavensis
FBgn0141393
I
0.000
GL11548
Drosophila persimilis
FBgn0149157
I
0.000
GM21847
Drosophila sechellia
FBgn0176724
I
0.000
GD11341
Drosophila simulans
FBgn0183090
I
0.000
GK19652
Drosophila willistoni
FBgn0221650
I
0.000
GE11925
Drosophila yakuba
FBgn0229707
I
0.000
pAbp
Drosophila melanogaster
FBgn0261619
D
0.000
fgenesh1_pm.scaffold_278000002
Nematostella vectensis
fgenesh1_pm.scaffold_278000002
I
0.000
gw.1.65.1
Branchiostoma floridae
gw.1.65.1
I
0.000
ISCW014211
Ixodes scapularis
ISCW014211
I
0.000
LOAG_01058
Loa loa
LOAG_01058
I
0.000
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.000
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.000
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.000
P20965
Xenopus laevis
P20965
I
0.000
PHUM617090
Pediculus humanus
PHUM617090
I
0.000
Q6IP09
Xenopus laevis
Q6IP09
I
0.000
XP_001177907.1
Strongylocentrotus purpuratus
XP_001177907.1
I
0.000
XP_002156904.1
Hydra magnipapillata
XP_002156904.1
I
0.000
XP_002156940.1
Hydra magnipapillata
XP_002156940.1
I
0.000
XP_801795.2
Strongylocentrotus purpuratus
XP_801795.2
I
0.000