LOC_Os02g19840 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os02g19840 T10898_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g19840.1 CCHC ZF 228 245

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

226 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.000
AAA60936 Xenopus laevis AAA60936 I 0.000
AAEL010318 Aedes aegypti AAEL010318 I 0.000
AAH52100 Xenopus laevis AAH52100 I 0.000
AAH72110 Xenopus laevis AAH72110 I 0.000
AAH73435 Xenopus laevis AAH73435 I 0.000
AAI08463 Xenopus laevis AAI08463 I 0.000
AGAP011092 Anopheles gambiae AGAP011092 I 0.000
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.000
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.000
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.000
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.000
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.000
Bm1_06880 Brugia malayi Bm1_06880 I 0.000
Bm1_16080 Brugia malayi Bm1_16080 I 0.000
CAA40721 Xenopus laevis CAA40721 I 0.000
CBG02207 Caenorhabditis briggsae CBG02207 N 0.000
CBN04295 Caenorhabditis brenneri CBN04295 I 0.000
CJA17800 Caenorhabditis japonica CJA17800 N 0.000
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.000
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.000
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.000
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.000
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.000
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.000
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.000
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.000
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.000
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.000
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.000
pabpc1a Danio rerio ENSDARG00000017219 I 0.000
pabpc1b Danio rerio ENSDARG00000021140 I 0.000
pabpc4 Danio rerio ENSDARG00000059259 I 0.000
LOC100054235 Equus caballus ENSECAG00000009396 I 0.000
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.000
PABPC1 Homo sapiens ENSG00000070756 D 0.000
PABPC4 Homo sapiens ENSG00000090621 D 0.000
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.000
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.000
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.000
PABPC4 Gallus gallus ENSGALG00000003800 I 0.000
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.000
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.000
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.000
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.000
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.000
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.000
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.000
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.000
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.000
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.000
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.000
Gm10110 Mus musculus ENSMUSG00000062093 I 0.000
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.000
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.000
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.000
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.000
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.000
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.000
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.000
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.000
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.000
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.000
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.000
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.000
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.000
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.000
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.000
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.000
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.000
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.000
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.000
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.000
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.000
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.000
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.000
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.000
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.000
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.000
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.000
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.000
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.000
GF12652 Drosophila ananassae FBgn0089688 I 0.000
GG21846 Drosophila erecta FBgn0114024 I 0.000
GH21052 Drosophila grimshawi FBgn0128514 I 0.000
GI18654 Drosophila mojavensis FBgn0141393 I 0.000
GL11548 Drosophila persimilis FBgn0149157 I 0.000
GM21847 Drosophila sechellia FBgn0176724 I 0.000
GD11341 Drosophila simulans FBgn0183090 I 0.000
GK19652 Drosophila willistoni FBgn0221650 I 0.000
GE11925 Drosophila yakuba FBgn0229707 I 0.000
pAbp Drosophila melanogaster FBgn0261619 D 0.000
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.000
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.000
ISCW014211 Ixodes scapularis ISCW014211 I 0.000
LOAG_01058 Loa loa LOAG_01058 I 0.000
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.000
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.000
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.000
P20965 Xenopus laevis P20965 I 0.000
PHUM617090 Pediculus humanus PHUM617090 I 0.000
Q6IP09 Xenopus laevis Q6IP09 I 0.000
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.000
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.000
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.000
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.000