CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os04g53890
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g53890
T11334_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g53890.1
CCHC ZF
348
365
GPCFNCGKHGHFAGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
226 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
chr3.CM0282.340.nc
Lotus japonicus
chr3.CM0282.340.nc
N
0.000
Cucsa.273510
Cucumis sativus
Cucsa.273510
N
0.000
Glyma02g15810.1
Glycine max
Glyma02g15810.1
N
0.000
Glyma06g33940.1
Glycine max
Glyma06g33940.1
N
0.000
Glyma07g32660.1
Glycine max
Glyma07g32660.1
N
0.000
Glyma12g19050.1
Glycine max
Glyma12g19050.1
N
0.000
GRMZM2G049866
Zea mays
GRMZM2G049866
N
0.000
GRMZM2G117715
Zea mays
GRMZM2G117715
N
0.000
LjT18N19.10.nd
Lotus japonicus
LjT18N19.10.nd
N
0.000
LOC_Os01g42820
Oryza sativa
LOC_Os01g42820
N
0.000
MDP0000250519
Malus x domestica
MDP0000250519
N
0.000
MDP0000410930
Malus x domestica
MDP0000410930
N
0.000
MDP0000575061
Malus x domestica
MDP0000575061
N
0.000
MDP0000596919
Malus x domestica
MDP0000596919
N
0.000
Medtr4g127970
Medicago truncatula
Medtr4g127970
N
0.000
mgf005844m
Mimulus guttatus
mgf005844m
N
0.000
mgf011517m
Mimulus guttatus
mgf011517m
N
0.000
mgf018937m
Mimulus guttatus
mgf018937m
N
0.000
PK03611.1
Cannabis sativa
PK03611.1
N
0.000
PK28408.1
Cannabis sativa
PK28408.1
N
0.000
B9GGV7_POPTR
Populus trichocarpa
POPTR_0001s38640
N
0.000
ppa005857m
Prunus persica
ppa005857m
N
0.000
SB03G027820
Sorghum bicolor
Sb03g027820
N
0.000