LOC_Os04g53890 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os04g53890 T11334_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g53890.1 CCHC ZF 348 365

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

226 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr3.CM0282.340.nc Lotus japonicus chr3.CM0282.340.nc N 0.000
Cucsa.273510 Cucumis sativus Cucsa.273510 N 0.000
Glyma02g15810.1 Glycine max Glyma02g15810.1 N 0.000
Glyma06g33940.1 Glycine max Glyma06g33940.1 N 0.000
Glyma07g32660.1 Glycine max Glyma07g32660.1 N 0.000
Glyma12g19050.1 Glycine max Glyma12g19050.1 N 0.000
GRMZM2G049866 Zea mays GRMZM2G049866 N 0.000
GRMZM2G117715 Zea mays GRMZM2G117715 N 0.000
LjT18N19.10.nd Lotus japonicus LjT18N19.10.nd N 0.000
LOC_Os01g42820 Oryza sativa LOC_Os01g42820 N 0.000
MDP0000250519 Malus x domestica MDP0000250519 N 0.000
MDP0000410930 Malus x domestica MDP0000410930 N 0.000
MDP0000575061 Malus x domestica MDP0000575061 N 0.000
MDP0000596919 Malus x domestica MDP0000596919 N 0.000
Medtr4g127970 Medicago truncatula Medtr4g127970 N 0.000
mgf005844m Mimulus guttatus mgf005844m N 0.000
mgf011517m Mimulus guttatus mgf011517m N 0.000
mgf018937m Mimulus guttatus mgf018937m N 0.000
PK03611.1 Cannabis sativa PK03611.1 N 0.000
PK28408.1 Cannabis sativa PK28408.1 N 0.000
B9GGV7_POPTR Populus trichocarpa POPTR_0001s38640 N 0.000
ppa005857m Prunus persica ppa005857m N 0.000
SB03G027820 Sorghum bicolor Sb03g027820 N 0.000