CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os08g03810
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os08g03810
T11891_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os08g03810.1
CCHC ZF
379
396
VDCFVCDKSGHWAKDCPE
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
108 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_02340
Chaetomium globosum
CHGG_02340
N
0.000
CMG145C
Cyanidioschyzon merolae
CMG145C
N
0.000
estExt_fgenesh1_pm.C_60202
Trichoderma virens
estExt_fgenesh1_pm.C_60202
N
0.000
estExt_fgenesh2_pg.C_70123
Thielavia terrestris
estExt_fgenesh2_pg.C_70123
N
0.000
e_gw1.3.143.1
Trichoderma atroviride
e_gw1.3.143.1
N
0.000