CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GF10107
(
Drosophila ananassae
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0087148
T17080_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0113299
CSD
184
249
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0113299
CSD
271
335
DSANNVLSSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0113299
CSD
343
412
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSASVPPQGREYACNITRL
FBpp0113299
CSD
515
582
REQGTIASLKEGFGFLRCVERQARLFFHFTEVLDTSREIDVNDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0113299
CSD
767
826
VYRGFIAVMKENFGFIETLSHDEEVFFHFSNYHGNPNWLELGQEVEYTLAPNGNTSVSGN
FBpp0113299
CSD
926
992
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGSTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila ananassae
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010018
Aedes aegypti
AAEL010018
N
0.741
AGAP004937
Anopheles gambiae
AGAP004937
N
0.752
Unr
Drosophila melanogaster
FBgn0035895
N
0.972
GG15082
Drosophila erecta
FBgn0107336
N
0.972
GH16406
Drosophila grimshawi
FBgn0123877
N
0.977
GI12487
Drosophila mojavensis
FBgn0135244
N
0.970
GM24938
Drosophila sechellia
FBgn0179800
N
0.972
GJ12391
Drosophila virilis
FBgn0199634
N
0.905
GK17751
Drosophila willistoni
FBgn0219750
N
0.972
GE21305
Drosophila yakuba
FBgn0238572
N
0.975
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.980