CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pa_2_11350
(
Podospora anserina
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
Pa_2_11350
T25894_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pa_2_11350
RRM
258
328
LHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQSKPTGSGFAVFSSHEEAAESLCMNGRALNEKAIE
Pa_2_11350
RanBP ZF
355
383
RPGDWTCPSCGFSNFQRRTACFRCSFPAV
Pa_2_11350
RanBP ZF
433
462
RAGDWKCGNEVCGYHNFAKNQNCLRCGAGR
Links
Other
RanBP ZF,RRM
family RBPs
Other
Podospora anserina
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.887
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.886
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.917
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.909
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.917
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.917
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.917
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.917
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.917
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.917
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.917
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.917
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.932
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.902
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.902
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.887
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.939
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.947
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.924
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.872
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.939
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.939
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.865
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.887
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.947
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.932
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.947
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.917
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.947
FVEG_05191
Fusarium verticillioides
FVEG_05191
N
0.803
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.955
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.909
MCYG_02047
Microsporum canis
MCYG_02047
N
0.886
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.931
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.886
NCU06684
Neurospora crassa
NCU06684
N
0.939
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.902
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.917
PMAA_081320
Penicillium marneffei
PMAA_081320
N
0.924
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.887
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.887
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.910
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.886
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.886
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.886
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.886
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.902
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.955
YALI0F21835g
Yarrowia lipolytica
YALI0F21835g
N
0.727