CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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WUBG_13107
(
Wuchereria bancrofti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
WUBG_13107
T31593_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
WUBG_13107T0
RRM
40
110
IYIGGLPYDLNEGDVIAVFSQYGEIVNINLIRDRKTGKSRGFAFVCYEDQRSTILAVDNFNGIKLLKRIIR
Links
Other
RRM
family RBPs
Other
Wuchereria bancrofti
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
145168
Helobdella robusta
145168
N
0.746
AAEL002461
Aedes aegypti
AAEL002461
N
0.732
AGAP000977
Anopheles gambiae
AGAP000977
N
0.746
Ame_R006638
Ailuropoda melanoleuca
Ame_R006638
N
0.764
Aqu1.200557
Amphimedon queenslandica
Aqu1.200557
N
0.789
Aqu1.228439
Amphimedon queenslandica
Aqu1.228439
N
0.803
Bm1_02690
Brugia malayi
Bm1_02690
N
1.000
C30B5.4
Caenorhabditis elegans
C30B5.4
N
0.817
An07g05140
Aspergillus niger
CADANGAG00005786
N
0.704
ATEG_05773
Aspergillus terreus
CADATEAG00002943
N
0.704
CBG02589
Caenorhabditis briggsae
CBG02589
N
0.803
CBN24057
Caenorhabditis brenneri
CBN24057
N
0.789
CJA10629
Caenorhabditis japonica
CJA10629
N
0.789
CRE26315
Caenorhabditis remanei
CRE26315
N
0.803
DGIL_AUG5s13597g2t1
Acyrtosiphon pisum
DGIL_AUG5s13597g2t1
N
0.718
RBMX2
Anolis carolinensis
ENSACAG00000008819
N
0.750
LOC534630
Bos taurus
ENSBTAG00000006252
N
0.704
LOC613705
Bos taurus
ENSBTAG00000014771
N
0.704
RBMX2
Canis familiaris
ENSCAFG00000018770
N
0.743
LOC100388331
Callithrix jacchus
ENSCJAG00000002436
N
0.764
RBMX2
Cavia porcellus
ENSCPOG00000006640
N
0.778
ENSCSAVG00000001047
Ciona savignyi
ENSCSAVG00000001047
N
0.817
rbmx2
Danio rerio
ENSDARG00000044380
N
0.761
LOC100058600
Equus caballus
ENSECAG00000008257
N
0.764
RBMX2
Erinaceus europaeus
ENSEEUG00000000839
N
0.722
RBMX2
Echinops telfairi
ENSETEG00000001763
N
0.764
RBMX2
Homo sapiens
ENSG00000134597
N
0.764
RBMX2
Gasterosteus aculeatus
ENSGACG00000001855
N
0.718
RBMX2
Gallus gallus
ENSGALG00000004025
N
0.750
ENSGGOG00000016146
Gorilla gorilla
ENSGGOG00000016146
N
0.750
RBMX2
Gorilla gorilla
ENSGGOG00000023687
N
0.764
ENSGGOG00000026106
Gorilla gorilla
ENSGGOG00000026106
N
0.736
RBMX2
Loxodonta africana
ENSLAFG00000017625
N
0.703
ENSLAFG00000028277
Loxodonta africana
ENSLAFG00000028277
N
0.761
RBMX2
Macropus eugenii
ENSMEUG00000010913
N
0.764
RBMX2
Meleagris gallopavo
ENSMGAG00000001801
N
0.736
RBMX2
Microcebus murinus
ENSMICG00000015139
N
0.764
ENSMLUG00000010298
Myotis lucifugus
ENSMLUG00000010298
N
0.764
ENSMLUG00000017095
Myotis lucifugus
ENSMLUG00000017095
N
0.775
RBMX2
Macaca mulatta
ENSMMUG00000008389
N
0.764
XP_001110036.1
Macaca mulatta
ENSMMUG00000020845
N
0.764
XM_001377711.1
Monodelphis domestica
ENSMODG00000012002
N
0.750
ENSMODG00000019800
Monodelphis domestica
ENSMODG00000019800
N
0.750
Rbmx2
Mus musculus
ENSMUSG00000031107
N
0.750
RBMX2
Ornithorhynchus anatinus
ENSOANG00000001362
N
0.730
RBMX2
Oryctolagus cuniculus
ENSOCUG00000011809
N
0.753
ENSOGAG00000006237
Otolemur garnettii
ENSOGAG00000006237
N
0.764
ENSOGAG00000009060
Otolemur garnettii
ENSOGAG00000009060
N
0.722
RBMX2
Oryzias latipes
ENSORLG00000013183
N
0.746
RBMX2
Procavia capensis
ENSPCAG00000012903
N
0.722
ENSPPYG00000020717
Pongo pygmaeus
ENSPPYG00000020717
N
0.736
XR_023755.1
Pan troglodytes
ENSPTRG00000022269
N
0.736
RBMX2
Pteropus vampyrus
ENSPVAG00000004425
N
0.764
Rbmx2
Rattus norvegicus
ENSRNOG00000007371
N
0.750
RBMX2
Sorex araneus
ENSSARG00000007350
N
0.775
RBMX2
Spermophilus tridecemlineatus
ENSSTOG00000015391
N
0.764
RBMX2
Tetraodon nigroviridis
ENSTNIG00000007672
N
0.761
RBMX2
Takifugu rubripes
ENSTRUG00000001699
N
0.775
RBMX2
Tarsius syrichta
ENSTSYG00000010611
N
0.732
RBMX2
Tursiops truncatus
ENSTTRG00000016210
N
0.764
estExt_fgenesh1_pg.C_410012
Monosiga brevicollis
estExt_fgenesh1_pg.C_410012
N
0.704
estExt_fgenesh2_pg.C_1800064
Branchiostoma floridae
estExt_fgenesh2_pg.C_1800064
N
0.704
estExt_Genewise1Plus.C_110324
Daphnia pulex
estExt_Genewise1Plus.C_110324
N
0.704
CG10466
Drosophila melanogaster
FBgn0032822
N
0.718
GA10331-RA
Drosophila pseudoobscura
FBgn0070389
N
0.704
GF14433
Drosophila ananassae
FBgn0091460
N
0.704
GG21207
Drosophila erecta
FBgn0113387
N
0.718
GI11259
Drosophila mojavensis
FBgn0134020
N
0.718
GI11260
Drosophila mojavensis
FBgn0134021
N
0.718
GI20215
Drosophila mojavensis
FBgn0142951
N
0.718
GL26176
Drosophila persimilis
FBgn0163758
N
0.704
GM17378
Drosophila sechellia
FBgn0172288
N
0.718
GD24233
Drosophila simulans
FBgn0195582
N
0.718
GJ13600
Drosophila virilis
FBgn0200822
N
0.732
GE13281
Drosophila yakuba
FBgn0230967
N
0.718
fgenesh2_pg.C_sca_10000115
Lottia gigantea
fgenesh2_pg.C_sca_10000115
N
0.746
gw.130.169.1
Nematostella vectensis
gw.130.169.1
N
0.718
gw1.1.2244.1
Trichoplax adhaerens
gw1.1.2244.1
N
0.718
gw1.1.2440.1
Mucor circinelloides
gw1.1.2440.1
N
0.704
gw1.1.945.1
Micromonas pusilla
gw1.1.945.1
N
0.718
gw1.462.53.1
Capitella teleta
gw1.462.53.1
N
0.775
LOAG_03303
Loa loa
LOAG_03303
N
0.892
nasonia_NCBI_hmm382923
Nasonia vitripennis
nasonia_NCBI_hmm382923
N
0.803
PHUM617480
Pediculus humanus
PHUM617480
N
0.718
PredSwiss_CON1238.1
Pneumocystis carinii
PredSwiss_CON1238.1
N
0.718
Sjc_0109550
Schistosoma japonicum
Sjc_0109550
N
0.743
Smp_170230
Schistosoma mansoni
Smp_170230
N
0.743
XP_001180915.1
Strongylocentrotus purpuratus
XP_001180915.1
N
0.746
XP_002164481.1
Hydra magnipapillata
XP_002164481.1
N
0.817
XP_791635.2
Strongylocentrotus purpuratus
XP_791635.2
N
0.746