PK14373.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK14373.1 T31696_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK14373.1 RRM 29 87
PK14373.1 RRM 129 190
PK14373.1 RRM 280 346
PK14373.1 RRM 390 456

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29863.m001059 Ricinus communis 29863.m001059 N 0.859
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.837
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.852
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.750
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.738
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.864
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.886
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.886
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.886
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.886
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.835
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.906
e_gw1.48.34.1 Physcomitrella patens e_gw1.48.34.1 N 0.713
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.876
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.869
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.880
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.741
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.749
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.885
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.729
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.737
MDP0000043338 Malus x domestica MDP0000043338 N 0.757
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.835
mgf010164m Mimulus guttatus mgf010164m N 0.849
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.826
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.826
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.842
ppa005775m Prunus persica ppa005775m N 0.922
SB09G021560 Sorghum bicolor Sb09g021560 N 0.753