PTB3 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT1G43190-TAIR-G T32653_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G43190.1-P RRM 8 74
AT1G43190.1-P RRM 108 169
AT1G43190.1-P RRM 247 313
AT1G43190.1-P RRM 357 423
AT1G43190.2-P RRM 8 74
AT1G43190.2-P RRM 108 169
AT1G43190.2-P RRM 247 313
AT1G43190.2-P RRM 357 423
AT1G43190.3-P RRM 8 65
AT1G43190.3-P RRM 106 167
AT1G43190.3-P RRM 245 311
AT1G43190.3-P RRM 355 421

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.985
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.867
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.867
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.867
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.867
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.856
ppa005775m Prunus persica ppa005775m N 0.855
PK14373.1 Cannabis sativa PK14373.1 N 0.852
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.850
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.844
29863.m001059 Ricinus communis 29863.m001059 N 0.844
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.839
mgf010164m Mimulus guttatus mgf010164m N 0.838
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.830
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.824
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.823
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.819
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.816
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.812
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.780
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.735
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.732
SB09G021560 Sorghum bicolor Sb09g021560 N 0.730
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.728
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.722
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.701