CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s14548g2t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s14548g2t1
T32013_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s14548g2t1
RRM
93
160
LCVSALHPKASDEQVKETLYREYRKFGEFSVRISHELEERVAYVCFRSSDDARDAKHSKPRISLFDKI
DGIL_AUG5s14548g2t1
RRM
315
384
LFAGNLEISISDEELRRIFGRYGVVEDIDVKRPLPGTGNAYAFVRYQNLDMAHRAKVELSGQYLGKFQCK
DGIL_AUG5s14548g2t1
RRM
396
460
IWVGGLGPWTSLAQLEREFDRFGVIKKIEYVKGDICAYIQFESIDAATAAVKEMRGVALGGPEHK
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH77185
Xenopus laevis
AAH77185
I
0.000
AAH77393
Xenopus laevis
AAH77393
I
0.000
amel4_ncbi_hmm42637
Apis mellifera
amel4_ncbi_hmm42637
I
0.000
Ame_R012465
Ailuropoda melanoleuca
Ame_R012465
I
0.000
BGIBMGA010396
Bombyx mori
BGIBMGA010396
I
0.000
LOC100385878
Callithrix jacchus
ENSCJAG00000015185
I
0.000
SRSF7
Homo sapiens
ENSG00000115875
D
0.000
SRSF7
Loxodonta africana
ENSLAFG00000005666
I
0.000
SRSF7
Macaca mulatta
ENSMMUG00000011025
I
0.000
ENSMODG00000008669
Monodelphis domestica
ENSMODG00000008669
I
0.000
SRSF7
Ornithorhynchus anatinus
ENSOANG00000004405
I
0.000
SRSF7
Pan troglodytes
ENSPTRG00000011851
I
0.000
srsf7
Xenopus tropicalis
ENSXETG00000025300
I
0.000
estExt_Genewise1.C_1590063
Capitella teleta
estExt_Genewise1.C_1590063
I
0.000
e_gw.267.117.1
Branchiostoma floridae
e_gw.267.117.1
I
0.000
fgenesh2_pg.scaffold_208000073
Branchiostoma floridae
fgenesh2_pg.scaffold_208000073
I
0.000
gw1.10.611.1
Lottia gigantea
gw1.10.611.1
I
0.000
PHUM241330
Pediculus humanus
PHUM241330
I
0.000
Smp_098890
Schistosoma mansoni
Smp_098890
I
0.000