PABPN1 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000031227 T38142_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000022698 RRM 19 88

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
2JWN_A Xenopus laevis 2JWN_A I 0.700
2JWN_B Xenopus laevis 2JWN_B I 0.700
AAI70309 Xenopus laevis AAI70309 I 0.700
AAI70311 Xenopus laevis AAI70311 I 0.700
AAO33927 Xenopus laevis AAO33927 N 0.000
AAR26263 Xenopus laevis AAR26263 I 0.700
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.743
PABPN1L Bos taurus ENSBTAG00000023752 N 0.000
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.718
LOC100051357 Equus caballus ENSECAG00000000378 I 0.704
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.000
PABPN1L Homo sapiens ENSG00000205022 I 0.743
PABPN1 Gallus gallus ENSGALG00000006242 I 0.757
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.729
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.000
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.000
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.757
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.757
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.000
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.000
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.729
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.718
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.700
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.743
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.743
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.729
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.700
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.000
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.700
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.831
Q6TY21 Xenopus laevis Q6TY21 I 0.700
Q804A5 Xenopus laevis Q804A5 N 0.000