pabpn1l (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000011258 T42872_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000024583 RRM 95 164

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI70309 Xenopus laevis AAI70309 I 0.971
AAI70311 Xenopus laevis AAI70311 I 0.971
AAO33927 Xenopus laevis AAO33927 N 0.971
2JWN_B Xenopus laevis 2JWN_B I 0.971
2JWN_A Xenopus laevis 2JWN_A I 0.971
Q804A5 Xenopus laevis Q804A5 N 0.971
Q6TY21 Xenopus laevis Q6TY21 I 0.971
AAR26263 Xenopus laevis AAR26263 I 0.971
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.771
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.743
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.743
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.743
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.743
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.729
PABPN1L Homo sapiens ENSG00000205022 I 0.729
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.729
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.729
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.729
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.729
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.729
PABPN1 Gallus gallus ENSGALG00000006242 I 0.729
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.729
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.718
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.714
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.714
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.714
PABPN1L Bos taurus ENSBTAG00000023752 N 0.714
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.704
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.700
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.700
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.700
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.700
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.700
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.700
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.700
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.700
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.700
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.700
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.700
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.700
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.700
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.700
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.700
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.700
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.700
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.700
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.700
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.700
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700
LOC100055599 Equus caballus ENSECAG00000011652 I 0.700
PABPN1 Homo sapiens ENSG00000100836 D 0.700
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.700