CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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2JWN_A
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
2JWN_A
T59412_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPN1
M148_0.6
Homo sapiens
ARAAGA
RNAcompete
Ray et al.(2013)
RNCMPT00157
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
2JWN_A
RRM
39
108
VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
2JWN_B
Xenopus laevis
2JWN_B
I
1.000
Q6TY21
Xenopus laevis
Q6TY21
I
1.000
AAR26263
Xenopus laevis
AAR26263
I
1.000
AAI70309
Xenopus laevis
AAI70309
I
1.000
AAI70311
Xenopus laevis
AAI70311
I
1.000
pabpn1l
Xenopus tropicalis
ENSXETG00000011258
I
0.971
Q804A5
Xenopus laevis
Q804A5
N
0.971
AAO33927
Xenopus laevis
AAO33927
N
0.971
PABPN1L
Ornithorhynchus anatinus
ENSOANG00000013901
I
0.771
EPAB2_RAT
Rattus norvegicus
ENSRNOG00000029558
I
0.743
PABPN1L
Tursiops truncatus
ENSTTRG00000004691
N
0.743
PABPN1L
Loxodonta africana
ENSLAFG00000025902
I
0.729
PABPN1
Gallus gallus
ENSGALG00000006242
I
0.729
XM_001117810.1
Macaca mulatta
ENSMMUG00000029383
I
0.729
PABPN1L
Monodelphis domestica
ENSMODG00000003873
N
0.729
ENSPPYG00000007655
Pongo pygmaeus
ENSPPYG00000007655
I
0.729
PABPN1L
Homo sapiens
ENSG00000205022
I
0.729
Pabpn1l
Mus musculus
ENSMUSG00000069867
N
0.729
PABPN1L
Pan troglodytes
ENSPTRG00000031120
I
0.729
XM_001100533.1
Macaca mulatta
ENSMMUG00000012438
I
0.729
amel4_ncbi_hmm446
Apis mellifera
amel4_ncbi_hmm446
I
0.729
PABPN1L
Erinaceus europaeus
ENSEEUG00000004747
N
0.729
PABPN1L
Otolemur garnettii
ENSOGAG00000000433
I
0.718
PABPN1L
Pteropus vampyrus
ENSPVAG00000002716
I
0.714
PABPN1L
Anolis carolinensis
ENSACAG00000013250
I
0.714
PABPN1L
Bos taurus
ENSBTAG00000023752
N
0.714
e_gw1.29.77.1
Phycomyces blakesleeanus
e_gw1.29.77.1
I
0.714
PABPN1L
Ochotona princeps
ENSOPRG00000005597
I
0.714
PABPN1L
Sus scrofa
ENSSSCG00000002647
N
0.704
PABPN1
Pan troglodytes
ENSPTRG00000006168
I
0.700
ENSBTAG00000001853
Bos taurus
ENSBTAG00000001853
I
0.700
PABPN1
Pteropus vampyrus
ENSPVAG00000005270
I
0.700
PABPN1
Sus scrofa
ENSSSCG00000002023
I
0.700
Ame_R020627
Ailuropoda melanoleuca
Ame_R020627
I
0.700
e_gw1.4.1867.1
Agaricus bisporus
e_gw1.4.1867.1
N
0.700
BGIBMGA001950
Bombyx mori
BGIBMGA001950
I
0.700
DGIL_AUG5s13013g8t1
Acyrtosiphon pisum
DGIL_AUG5s13013g8t1
I
0.700
PABP2_BOVIN
Bos taurus
ENSBTAG00000006884
I
0.700
Pabpn1
Rattus norvegicus
ENSRNOG00000042195
I
0.700
PABPN1
Otolemur garnettii
ENSOGAG00000008710
I
0.700
Pabpn1
Dipodomys ordii
ENSDORG00000002873
I
0.700
PABPN1
Macaca mulatta
ENSMMUG00000014747
I
0.700
PABPN1
Myotis lucifugus
ENSMLUG00000012452
I
0.700
PABPN1
Loxodonta africana
ENSLAFG00000031227
I
0.700
PABPN1
Gorilla gorilla
ENSGGOG00000022683
I
0.700
LOC100055599
Equus caballus
ENSECAG00000011652
I
0.700
PABPN1
Cavia porcellus
ENSCPOG00000025574
I
0.700
LOC100396934
Callithrix jacchus
ENSCJAG00000007960
I
0.700
PABPN1
Oryctolagus cuniculus
ENSOCUG00000016174
I
0.700
PABPN1
Homo sapiens
ENSG00000100836
D
0.700
PABPN1
Ornithorhynchus anatinus
ENSOANG00000009218
I
0.700
B2CL2_CANFA
Canis familiaris
ENSCAFG00000011482
I
0.700
Pabpn1
Mus musculus
ENSMUSG00000022194
I
0.700
ENSPPYG00000005663
Pongo pygmaeus
ENSPPYG00000005663
I
0.700