CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC4
(
Sorex araneus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSARG00000000310
T41254_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000000279
RRM
74
142
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVL
ENSSARP00000000279
RRM
166
235
VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKAIF
ENSSARP00000000279
RRM
269
337
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Sorex araneus
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT1G35535
Arabidopsis thaliana
AT1G35535-TAIR-G
N
0.000
AT1G47360
Arabidopsis thaliana
AT1G47360-TAIR-G
N
0.000
AT1G48680
Arabidopsis thaliana
AT1G48680-TAIR-G
N
0.000
AT2G03100
Arabidopsis thaliana
AT2G03100-TAIR-G
N
0.000
AT2G06930
Arabidopsis thaliana
AT2G06930-TAIR-G
N
0.000
AT2G13930
Arabidopsis thaliana
AT2G13930-TAIR-G
N
0.000
AT2G19840
Arabidopsis thaliana
AT2G19840-TAIR-G
N
0.000
AT2G21310
Arabidopsis thaliana
AT2G21310-TAIR-G
N
0.000
AT3G27327
Arabidopsis thaliana
AT3G27327-TAIR-G
N
0.000
AT3G43444
Arabidopsis thaliana
AT3G43444-TAIR-G
N
0.000
AT4G05073
Arabidopsis thaliana
AT4G05073-TAIR-G
N
0.000
AT4G05133
Arabidopsis thaliana
AT4G05133-TAIR-G
N
0.000
AT4G09425
Arabidopsis thaliana
AT4G09425-TAIR-G
N
0.000
AT4G09595
Arabidopsis thaliana
AT4G09595-TAIR-G
N
0.000
AT5G28675
Arabidopsis thaliana
AT5G28675-TAIR-G
N
0.000
AT5G35820
Arabidopsis thaliana
AT5G35820-TAIR-G
N
0.000
AT5G57126
Arabidopsis thaliana
AT5G57126-TAIR-G
N
0.000