CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC4
(
Choloepus hoffmanni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCHOG00000005327
T35281_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000004726
RRM
36
104
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMIGMLLNDRKVF
ENSCHOP00000004726
RRM
128
197
VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF
ENSCHOP00000004726
RRM
231
299
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.986
PABPC4
Sorex araneus
ENSSARG00000000310
N
0.981
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.962
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.962
ENSMGAG00000005408
Meleagris gallopavo
ENSMGAG00000005408
N
0.913
Q5ZL53_CHICK
Gallus gallus
ENSGALG00000014450
N
0.856
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.852
ENSVPAG00000003865
Vicugna pacos
ENSVPAG00000003865
N
0.851
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.851
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
0.851
ENSDNOG00000008718
Dasypus novemcinctus
ENSDNOG00000008718
N
0.808
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.803
PABPC4
Felis catus
ENSFCAG00000015254
N
0.798
Pabpc1
Dipodomys ordii
ENSDORG00000013935
N
0.750