D4AC21_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000015642 T41103_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.975
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.878
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.878
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.878
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000021032 RRM 30 98
ENSRNOP00000021032 RRM 122 191
ENSRNOP00000021032 RRM 225 293
ENSRNOP00000021045 RRM 13 83
ENSRNOP00000021045 RRM 101 169
ENSRNOP00000021045 RRM 193 262
ENSRNOP00000021045 RRM 296 364
ENSRNOP00000053432 RRM 13 83
ENSRNOP00000053432 RRM 101 169
ENSRNOP00000053432 RRM 193 262
ENSRNOP00000053432 RRM 296 364

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.982
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.978
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.978
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.978
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.978
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.978
Gm10110 Mus musculus ENSMUSG00000062093 I 0.978
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.978
LOC100054235 Equus caballus ENSECAG00000009396 I 0.978
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.975
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.975
PABPC4 Homo sapiens ENSG00000090621 D 0.975
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.975
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.975
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.975
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.971
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.971
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.968
PABPC4 Pteropus vampyrus ENSPVAG00000002187 N 0.966
PABPC4 Sorex araneus ENSSARG00000000310 N 0.966
PABPC4 Choloepus hoffmanni ENSCHOG00000005327 N 0.962
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.957
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.932
PABPC4 Gallus gallus ENSGALG00000003800 I 0.925
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.921
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.918
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.918
AAH73435 Xenopus laevis AAH73435 I 0.914
pabpc4 Danio rerio ENSDARG00000059259 I 0.910
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.907
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.907
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.907
ENSMGAG00000005408 Meleagris gallopavo ENSMGAG00000005408 N 0.904
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.903
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.900
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.882
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.882
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.882
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.882
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.882
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.878
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.878
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.878
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.878
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.878
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.878
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.878
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.878
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.878
PABPC1 Homo sapiens ENSG00000070756 D 0.878
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.878
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.878
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.875
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.875
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.871
AAI08463 Xenopus laevis AAI08463 I 0.864
AAH72110 Xenopus laevis AAH72110 I 0.864
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.864
Q6IP09 Xenopus laevis Q6IP09 I 0.864
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.860
CAA40721 Xenopus laevis CAA40721 I 0.857
P20965 Xenopus laevis P20965 I 0.857
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.857
AAH52100 Xenopus laevis AAH52100 I 0.857
Q5ZL53_CHICK Gallus gallus ENSGALG00000014450 N 0.856
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.853
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.853
AAA60936 Xenopus laevis AAA60936 I 0.853
ENSMGAG00000012239 Meleagris gallopavo ENSMGAG00000012239 N 0.852
ENSCPOG00000012917 Cavia porcellus ENSCPOG00000012917 N 0.851
ENSVPAG00000003865 Vicugna pacos ENSVPAG00000003865 N 0.851
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.851
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.849
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.849
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.849
pabpc1a Danio rerio ENSDARG00000017219 I 0.849
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.849
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.849
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.846
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.846
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.842
pabpc1b Danio rerio ENSDARG00000021140 I 0.839
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.839
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.835
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.835
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.832
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.828
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.828
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.828
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.828
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.824
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.824
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.824
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.821
PABPC1L Gallus gallus ENSGALG00000004123 I 0.821
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.818
Q98SP8 Xenopus laevis Q98SP8 I 0.814
AAK29408 Xenopus laevis AAK29408 I 0.814
PABPC3 Homo sapiens ENSG00000151846 D 0.814
AAH80020 Xenopus laevis AAH80020 I 0.814
Q6GR16 Xenopus laevis Q6GR16 I 0.810
AAH71118 Xenopus laevis AAH71118 I 0.810
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.810
ENSDNOG00000008718 Dasypus novemcinctus ENSDNOG00000008718 N 0.808
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.806
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.806
ENSEEUG00000002701 Erinaceus europaeus ENSEEUG00000002701 N 0.803
PABPC1L Bos taurus ENSBTAG00000016849 I 0.803
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.803
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.799
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.799
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.799
LOC100070836 Equus caballus ENSECAG00000022681 I 0.796
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.796
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.796
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.792
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.792
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.792
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.792
pabpc1l Danio rerio ENSDARG00000002597 I 0.792
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.792
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.789
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.789
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.789
PABPC1L Homo sapiens ENSG00000101104 I 0.789
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.788
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.785
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.785
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.785
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.781
PHUM617090 Pediculus humanus PHUM617090 I 0.781
PABPC4 Felis catus ENSFCAG00000015254 N 0.779
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.778
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.770
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.767
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.763
LOC100056021 Equus caballus ENSECAG00000020699 I 0.763
ISCW014211 Ixodes scapularis ISCW014211 I 0.761
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.760
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.760
AGAP011092 Anopheles gambiae AGAP011092 I 0.760
AAEL010318 Aedes aegypti AAEL010318 I 0.756
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.753
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.753
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.753
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.753
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.753
Pabpc1 Dipodomys ordii ENSDORG00000013935 N 0.750
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.749
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.749
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.749
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.746
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.746
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.742
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.739
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.739
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.739
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.739
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.739
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.735
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.735
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.732
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.731
GJ21671 Drosophila virilis FBgn0208790 I 0.729
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.728
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.728
GH21052 Drosophila grimshawi FBgn0128514 I 0.725
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.724
GK19652 Drosophila willistoni FBgn0221650 I 0.722
GI18654 Drosophila mojavensis FBgn0141393 I 0.722
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.718
GL11548 Drosophila persimilis FBgn0149157 I 0.718
185682 Helobdella robusta 185682 I 0.717
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.715
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.715
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.714
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.713
Bm1_16080 Brugia malayi Bm1_16080 I 0.711
GE11925 Drosophila yakuba FBgn0229707 I 0.711
LOAG_01058 Loa loa LOAG_01058 I 0.711
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.710
Bm1_06880 Brugia malayi Bm1_06880 I 0.708
GG21846 Drosophila erecta FBgn0114024 I 0.708
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.707
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.707
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.707
pAbp Drosophila melanogaster FBgn0261619 D 0.704
GD11341 Drosophila simulans FBgn0183090 I 0.704
GM21847 Drosophila sechellia FBgn0176724 I 0.704
GF12652 Drosophila ananassae FBgn0089688 I 0.704