CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Pabpc1
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000013935
T36529_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000013100
RRM
36
104
IFIKNLHKSIDNKALYDTFSAFGNILSCSVVCDENGSKGYGFEHFETQEAADRAIEKMNGMLLNDPKVX
ENSDORP00000013100
RRM
150
197
XPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY
ENSDORP00000013100
RRM
231
299
LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
0.861
ENSVPAG00000003865
Vicugna pacos
ENSVPAG00000003865
N
0.861
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.861
Q5ZL53_CHICK
Gallus gallus
ENSGALG00000014450
N
0.861
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.856
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.817
ENSDNOG00000008718
Dasypus novemcinctus
ENSDNOG00000008718
N
0.817
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.760
PABPC4
Sorex araneus
ENSSARG00000000310
N
0.755
ENSMGAG00000005408
Meleagris gallopavo
ENSMGAG00000005408
N
0.755
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.750
PABPC4
Choloepus hoffmanni
ENSCHOG00000005327
N
0.750
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.750