CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSMGAG00000005408
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000005408
T38364_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000005354
RRM
37
105
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF
ENSMGAP00000005354
RRM
129
197
VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV
ENSMGAP00000005354
RRM
232
300
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.928
PABPC4
Sorex araneus
ENSSARG00000000310
N
0.918
PABPC4
Choloepus hoffmanni
ENSCHOG00000005327
N
0.913
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.904
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.904
Q5ZL53_CHICK
Gallus gallus
ENSGALG00000014450
N
0.870
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.866
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.865
ENSVPAG00000003865
Vicugna pacos
ENSVPAG00000003865
N
0.865
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
0.865
ENSDNOG00000008718
Dasypus novemcinctus
ENSDNOG00000008718
N
0.822
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.822
Pabpc1
Dipodomys ordii
ENSDORG00000013935
N
0.755
PABPC4
Felis catus
ENSFCAG00000015254
N
0.731