hnrnpc (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000016162 T42905_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.922
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.859
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000035243 RRM 19 82

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
23616_YPL054W Saccharomyces paradoxus 23616_YPL054W N 0.000
25080_YPL054W Saccharomyces bayanus 25080_YPL054W N 0.000
A7TTU4_VANPO Vanderwaltozyma polyspora A7TTU4_VANPO N 0.000
ADR062W Ashbya gossypii ADR062W N 0.000
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.000
CPAG_02338 Candida parapsilosis CPAG_02338 N 0.000
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.000
e_gwh1.2.1.2495.1 Pichia stipitis e_gwh1.2.1.2495.1 N 0.000
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.000
orf19.7385 Candida albicans orf19.7385 N 0.000
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.000
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.000
LEE1 Saccharomyces cerevisiae YPL054W N 0.000
ZYRO0F08690g Zygosaccharomyces rouxii ZYRO0F08690g N 0.000