CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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hnrnpc
(
Xenopus tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSXETG00000016162
T42905_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.922
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.859
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.766
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000035243
RRM
19
82
VFIGNLNTLVVKKADVEAIFSKYGKIVGCSVHKGYAFVQYSNERNARTAVAGEDGRMIAGQVMD
Links
Other
RRM
family RBPs
Other
Xenopus tropicalis
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.000
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.000
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.000
ADR062W
Ashbya gossypii
ADR062W
N
0.000
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.000
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.000
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.000
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.000
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.000
orf19.7385
Candida albicans
orf19.7385
N
0.000
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.000
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.000
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.000
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.000