CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cd36_85970
(
Candida dubliniensis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Cd36_85970
T05989_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cd36_85970
CCCH ZF
116
140
SHVPCKFYRQGVCQAGNSCPFSHNL
Cd36_85970
CCCH ZF
148
169
KLPCKYFQKGNCKFGLKCALAH
Links
Other
CCCH ZF
family RBPs
Other
Candida dubliniensis
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.957
orf19.7385
Candida albicans
orf19.7385
N
0.957
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.938
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.917
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.878
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.851
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.800
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.792
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.766
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.766
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.755
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.740
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.740
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.740
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.740
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.740
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.740
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.740
ADR062W
Ashbya gossypii
ADR062W
N
0.740
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.735
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.735
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.735
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.735
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.729
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.729
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.725
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.720
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.720
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.720
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.720
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.720
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.720
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.714
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.714
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.714
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.714
NCU05007
Neurospora crassa
NCU05007
N
0.714
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.714
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.708
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.700
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.700
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.700
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.700