CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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25080_YPL054W
(
Saccharomyces bayanus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
25080_YPL054W
T05880_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
25080_YPL054W
CCCH ZF
85
110
YSHVPCKFFKMGNCQAGPSCPFSHSP
25080_YPL054W
CCCH ZF
119
140
LPCKYFAKGNCKFGNKCVNAHI
Links
Other
CCCH ZF
family RBPs
Other
Saccharomyces bayanus
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.958
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.939
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.939
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.796
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.780
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.760
ADR062W
Ashbya gossypii
ADR062W
N
0.760
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.755
orf19.7385
Candida albicans
orf19.7385
N
0.755
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.729
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.720
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.714
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.714
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.706
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.706
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.700
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.700