e_gwh1.2.1.2495.1 (Pichia stipitis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 e_gwh1.2.1.2495.1 T04957_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gwh1.2.1.2495.1 CCCH ZF 13 37
e_gwh1.2.1.2495.1 CCCH ZF 44 66

Links

Other CCCH ZF family RBPs
Other Pichia stipitis RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.938
orf19.7385 Candida albicans orf19.7385 N 0.938
CTRG_02259 Candida tropicalis CTRG_02259 N 0.898
CLUG_02022 Candida lusitaniae CLUG_02022 N 0.898
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.896
CPAG_02338 Candida parapsilosis CPAG_02338 N 0.854
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.800
XP_002493509.1 Pichia pastoris XP_002493509.1 N 0.771
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.740
ADR062W Ashbya gossypii ADR062W N 0.740
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.740
YALI0B12540g Yarrowia lipolytica YALI0B12540g N 0.735
FVEG_07196 Fusarium verticillioides FVEG_07196 N 0.729
FOXG_04082 Fusarium oxysporum FOXG_04082 N 0.729
estExt_fgenesh1_pg.C_160206 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160206 N 0.720
estExt_fgenesh1_kg.C_60003 Myceliophthora thermophila estExt_fgenesh1_kg.C_60003 N 0.720
EAT89389.2 Phaeosphaeria nodorum EAT89389.2 N 0.720
SNOG_02658 Stagonospora nodorum SNOG_02658 N 0.720
22086_YPL054W Saccharomyces mikatae 22086_YPL054W N 0.720
25080_YPL054W Saccharomyces bayanus 25080_YPL054W N 0.720
PTRG_01963 Pyrenophora tritici repentis PTRG_01963 N 0.720
AB08315.1 Alternaria brassicicola AB08315.1 N 0.720
GSTUMT00003772001 Tuber melanosporum GSTUMT00003772001 N 0.720
CC1G_08614 Coprinopsis cinerea CC1G_08614 N 0.714
A7TTU4_VANPO Vanderwaltozyma polyspora A7TTU4_VANPO N 0.714
VDAG_09556 Verticillium dahliae VDAG_09556 N 0.708
VDBG_09822 Verticillium albo atrum VDBG_09822 N 0.708
gw1.2.2109.1 Mucor circinelloides gw1.2.2109.1 N 0.708
23616_YPL054W Saccharomyces paradoxus 23616_YPL054W N 0.706
ZYRO0F08690g Zygosaccharomyces rouxii ZYRO0F08690g N 0.706
LEE1 Saccharomyces cerevisiae YPL054W N 0.706
SJAG_03191 Schizosaccharomyces japonicus SJAG_03191 N 0.700
e_gw1.29.29.1 Trichoderma virens e_gw1.29.29.1 N 0.700
GLRG_01727 Colletotrichum graminicola GLRG_01727 N 0.700
estExt_Genewise1.C_60695 Trichoderma atroviride estExt_Genewise1.C_60695 N 0.700
gw1.28.197.1 Nectria haematococca gw1.28.197.1 N 0.700
estExt_fgenesh5_pg.C_100355 Trichoderma reesei estExt_fgenesh5_pg.C_100355 N 0.700
Pa_5_7490 Podospora anserina Pa_5_7490 N 0.700
CHGG_00049 Chaetomium globosum CHGG_00049 N 0.700
KLTH0E11836g Kluyveromyces thermotolerans KLTH0E11836g N 0.700