CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPAG_02338
(
Candida parapsilosis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CPAG_02338
T01321_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPAG_02338.1
CCCH ZF
83
107
SHVPCKFFKQGNCQAGDSCPFSHNI
CPAG_02338.1
CCCH ZF
115
136
KLPCKYFLRGNCKFGLKCALAH
Links
Other
CCCH ZF
family RBPs
Other
Candida parapsilosis
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
orf19.7385
Candida albicans
orf19.7385
N
0.894
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.854
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.851
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.851
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.833
LELG_02816
Lodderomyces elongisporus
LELG_02816
N
0.766
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.755
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.755
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.755
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.740
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.740
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.740
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.740
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.735
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.729
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.720
Genemark.6481_g
Agaricus bisporus
Genemark.6481_g
N
0.708
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.702
estExt_fgeneshTM_pg.C_60122
Tremella mesenterica
estExt_fgeneshTM_pg.C_60122
N
0.702
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.702
ADR062W
Ashbya gossypii
ADR062W
N
0.700
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.700
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.700