CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KLLA0B09878g
(
Kluyveromyces lactis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
KLLA0B09878g
T06238_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
KLLA0B09878g
CCCH ZF
87
112
YSHVPCKFFVQGNCQAGDSCPFSHDL
KLLA0B09878g
CCCH ZF
117
140
SEQVCKYFQKGNCKFGMKCANAHI
Links
Other
CCCH ZF
family RBPs
Other
Kluyveromyces lactis
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.820
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.800
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.780
ADR062W
Ashbya gossypii
ADR062W
N
0.780
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.780
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.765
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.765
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.765
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.765
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.765
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.765
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.765
NCU05007
Neurospora crassa
NCU05007
N
0.765
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.765
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.765
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.760
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.760
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.760
orf19.7385
Candida albicans
orf19.7385
N
0.760
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.760
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.760
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.745
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.745
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.745
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.740
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.740
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.740
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.740
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.740
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.725
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.725
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.725
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.720
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.720
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.700
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.700