LOC_Os01g64770 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os01g64770 T44937_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g64770.1 RRM 8 73
LOC_Os01g64770.1 RRM 110 171
LOC_Os01g64770.1 RRM 258 324
LOC_Os01g64770.1 RRM 368 434
LOC_Os01g64770.2 RRM 8 51
LOC_Os01g64770.2 RRM 106 167
LOC_Os01g64770.2 RRM 254 320
LOC_Os01g64770.2 RRM 364 430
LOC_Os01g64770.3 RRM 8 73
LOC_Os01g64770.3 RRM 110 171
LOC_Os01g64770.5 RRM 8 73
LOC_Os01g64770.5 RRM 110 171

Links

Other RRM family RBPs
Other Oryza sativa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29863.m001059 Ricinus communis 29863.m001059 N 0.719
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.701
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.701
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.744
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.821
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.727
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.739
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.739
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.739
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.739
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.729
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.710
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.733
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.714
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.729
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.744
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.721
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.721
LOC_Os05g36120 Oryza sativa LOC_Os05g36120 N 0.737
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.714
mgf010164m Mimulus guttatus mgf010164m N 0.721
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.780
PK14373.1 Cannabis sativa PK14373.1 N 0.729
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.714
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.733
ppa005775m Prunus persica ppa005775m N 0.706
SB09G021560 Sorghum bicolor Sb09g021560 N 0.744