CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ppa-etr-1
(
Pristionchus pacificus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PPA28330
T45855_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
0.775
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA28330
RRM
155
225
LFIYHLPQDFSDADLYNTFAPFGNVLSAKVFIDKQTNLSKCFGFVSYDNSQSAANAISGMNGFQIGTKRLK
Links
Other
RRM
family RBPs
Other
Pristionchus pacificus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_00173
Coprinopsis cinerea
CC1G_00173
N
0.000
EDP43472.1
Malassezia globosa
EDP43472.1
N
0.000
estExt_fgenesh2_kg.C_40528
Agaricus bisporus
estExt_fgenesh2_kg.C_40528
N
0.000
estExt_fgenesh2_pm.C_40077
Heterobasidion annosum
estExt_fgenesh2_pm.C_40077
N
0.000
estExt_GeneWisePlus_human.C_40675
Laccaria bicolor
estExt_GeneWisePlus_human.C_40675
N
0.000
fgenesh1_pm.C_scaffold_1000427
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000427
N
0.000
genemark.5060_g
Pleurotus ostreatus
genemark.5060_g
N
0.000