SB01G021020 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb01g021020 T45884_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb01g021020.1 RRM 168 237
Sb01g021020.1 RRM 265 335
Sb01g021020.1 RRM 465 519

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001297 Ricinus communis 30183.m001297 N 0.806
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.898
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.797
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.744
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.782
BGIOSIBCE032206 Oryza indica BGIOSIBCE032206 N 0.807
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.888
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.929
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.792
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.751
Cucsa.370400 Cucumis sativus Cucsa.370400 N 0.765
estExt_Genewise1.C_320014 Selaginella moellendorfii estExt_Genewise1.C_320014 N 0.711
XM_002886041.1 Arabidopsis lyrata fgenesh2_kg.3__3274__AT2G16940.1 N 0.751
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.756
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.766
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.756
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.807
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.796
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.990
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.980
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.746
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.827
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.918
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.776
MDP0000319817 Malus x domestica MDP0000319817 N 0.776
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.751
mgf012385m Mimulus guttatus mgf012385m N 0.782
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.711
PDK_20s1549391g001 Phoenix dactylifera PDK_20s1549391g001 N 0.746
PK01525.1 Cannabis sativa PK01525.1 N 0.772
PK20903.1 Cannabis sativa PK20903.1 N 0.746
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.727
ppa002854m Prunus persica ppa002854m N 0.777
ppa003064m Prunus persica ppa003064m N 0.756
SB01G046740 Sorghum bicolor Sb01g046740 N 0.908