Cucsa.370400 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.370400 T49661_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.370400.1 RRM 211 280
Cucsa.370400.1 RRM 314 383
Cucsa.370400.1 RRM 522 576
Cucsa.370400.2 RRM 211 280
Cucsa.370400.2 RRM 314 383

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001297 Ricinus communis 30183.m001297 N 0.785
AC233901.1_FG001 Zea mays AC233901.1_FG001 N 0.801
XM_002873382.1 Arabidopsis lyrata Al_scaffold_0006_891 N 0.746
AT2G16940 Arabidopsis thaliana AT2G16940-TAIR-G N 0.773
AT5G09880 Arabidopsis thaliana AT5G09880-TAIR-G N 0.746
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.782
BRADI3G27480 Brachypodium distachyon BRADI3G27480 N 0.776
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.786
cassava37706.valid.m1 Manihot esculenta cassava37706.valid.m1 N 0.787
cassava37707.valid.m1 Manihot esculenta cassava37707.valid.m1 N 0.787
Cucsa.101320 Cucumis sativus Cucsa.101320 N 0.830
XM_002886041.1 Arabidopsis lyrata fgenesh2_kg.3__3274__AT2G16940.1 N 0.781
Glyma05g32080.1 Glycine max Glyma05g32080.1 N 0.736
Glyma06g15370.1 Glycine max Glyma06g15370.1 N 0.746
Glyma08g15370.1 Glycine max Glyma08g15370.1 N 0.741
Glyma10g42890.1 Glycine max Glyma10g42890.1 N 0.816
Glyma20g24130.1 Glycine max Glyma20g24130.1 N 0.810
GRMZM2G071589 Zea mays GRMZM2G071589 N 0.765
GRMZM2G076597 Zea mays GRMZM2G076597 N 0.816
GSVIVG00022281001 Vitis vinifera GSVIVG00022281001 N 0.716
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.782
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.781
MDP0000319817 Malus x domestica MDP0000319817 N 0.790
MDP0000748479 Malus x domestica MDP0000748479 N 0.794
Medtr4g141620 Medicago truncatula Medtr4g141620 N 0.736
mgf012385m Mimulus guttatus mgf012385m N 0.787
PDK_20s1549391g001 Phoenix dactylifera PDK_20s1549391g001 N 0.711
PK01525.1 Cannabis sativa PK01525.1 N 0.776
PK20903.1 Cannabis sativa PK20903.1 N 0.741
B9H6Q0_POPTR Populus trichocarpa POPTR_0005s19200 N 0.727
ppa002854m Prunus persica ppa002854m N 0.751
ppa003064m Prunus persica ppa003064m N 0.765
SB01G021020 Sorghum bicolor Sb01g021020 N 0.765
SB01G046740 Sorghum bicolor Sb01g046740 N 0.796