CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw.982.9.1
(
Nematostella vectensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw.982.9.1
T50267_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
0.789
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.982.9.1
RRM
76
146
LFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLK
Links
Other
RRM
family RBPs
Other
Nematostella vectensis
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30128.m009003
Ricinus communis
30128.m009003
N
0.000
emb1138
Arabidopsis thaliana
AT5G26742-TAIR-G
N
0.000
BGIOSIBCE013536
Oryza indica
BGIOSIBCE013536
N
0.000
BRADI1G03180
Brachypodium distachyon
BRADI1G03180
N
0.000
cassava12877.valid.m1
Manihot esculenta
cassava12877.valid.m1
N
0.000
Cucsa.051030
Cucumis sativus
Cucsa.051030
N
0.000
XM_002874266.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002106
N
0.000
Glyma03g38550.1
Glycine max
Glyma03g38550.1
N
0.000
Glyma19g41150.1
Glycine max
Glyma19g41150.1
N
0.000
Glyma20g22120.1
Glycine max
Glyma20g22120.1
N
0.000
GRMZM2G163072
Zea mays
GRMZM2G163072
N
0.000
GRMZM2G415491
Zea mays
GRMZM2G415491
N
0.000
GSVIVG00031360001
Vitis vinifera
GSVIVG00031360001
N
0.000
LjB06P23.40.nc
Lotus japonicus
LjB06P23.40.nc
N
0.000
LOC_Os03g61220
Oryza sativa
LOC_Os03g61220
N
0.000
Medtr7g134530
Medicago truncatula
Medtr7g134530
N
0.000
mgf008200m
Mimulus guttatus
mgf008200m
N
0.000
mgf012653m
Mimulus guttatus
mgf012653m
N
0.000
PK16552.1
Cannabis sativa
PK16552.1
N
0.000
B9N3Y9_POPTR
Populus trichocarpa
POPTR_0005s00200
N
0.000
B9N3Z3_POPTR
Populus trichocarpa
POPTR_0005s00240
N
0.000
Sb01g002660
Sorghum bicolor
Sb01g002660
N
0.000