CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw.982.9.1
(
Nematostella vectensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw.982.9.1
T50267_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
0.789
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.982.9.1
RRM
76
146
LFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLK
Links
Other
RRM
family RBPs
Other
Nematostella vectensis
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_04124
Botrytis cinerea
BC1G_04124
N
0.000
CHGG_07853
Chaetomium globosum
CHGG_07853
N
0.000
estExt_fgenesh1_pg.C_20906
Cryphonectria parasitica
estExt_fgenesh1_pg.C_20906
N
0.000
estExt_Genewise1.C_130193
Neurospora tetrasperma
estExt_Genewise1.C_130193
N
0.000
estExt_Genewise1Plus.C_70288
Trichoderma atroviride
estExt_Genewise1Plus.C_70288
N
0.000
estExt_Genewise1Plus.C_sca_1_chr1_3_00914
Nectria haematococca
estExt_Genewise1Plus.C_sca_1_chr1_3_00914
N
0.000
e_gw1.11.367.1
Neurospora discreta
e_gw1.11.367.1
N
0.000
e_gw1.11.407.1
Trichoderma reesei
e_gw1.11.407.1
N
0.000
fgenesh1_pm.7_#_395
Myceliophthora thermophila
fgenesh1_pm.7_#_395
N
0.000
FGSG_00841
Fusarium graminearum
FGSG_00841
N
0.000
FOXG_00799
Fusarium oxysporum
FOXG_00799
N
0.000
FVEG_00716
Fusarium verticillioides
FVEG_00716
N
0.000
GLRG_08647
Colletotrichum graminicola
GLRG_08647
N
0.000
gw1.8.62.1
Trichoderma virens
gw1.8.62.1
N
0.000
MGG_14563
Magnaporthe oryzae
MGG_14563
N
0.000
NCU11928
Neurospora crassa
NCU11928
N
0.000
Pa_3_7810
Podospora anserina
Pa_3_7810
N
0.000
SS1G_03751
Sclerotinia sclerotiorum
SS1G_03751
N
0.000
VDAG_06977
Verticillium dahliae
VDAG_06977
N
0.000
VDBG_05326
Verticillium albo atrum
VDBG_05326
N
0.000