estExt_Genewise1Plus.C_20056 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_20056 T51411_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_20056 RRM 60 129
estExt_Genewise1Plus.C_20056 RRM 140 205
estExt_Genewise1Plus.C_20056 RRM 235 301

Links

Other RRM family RBPs
Other Capitella teleta RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.712
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.717
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.702
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.722
RBM46 Bos taurus ENSBTAG00000001696 I 0.712
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.712
RBM46 Canis familiaris ENSCAFG00000008473 I 0.717
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.712
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.717
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.712
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.714
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.712
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.712
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.702
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.712
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.712
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.704
RBM47 Danio rerio ENSDARG00000061985 I 0.732
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.712
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.712
RBM46 Equus caballus ENSECAG00000007649 I 0.727
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.702
RBM47 Echinops telfairi ENSETEG00000009194 I 0.712
RBM46 Echinops telfairi ENSETEG00000014902 I 0.717
RBM46 Felis catus ENSFCAG00000009246 I 0.707
RBM47 Felis catus ENSFCAG00000012399 I 0.712
RBM46 Homo sapiens ENSG00000151962 D 0.717
RBM47 Homo sapiens ENSG00000163694 I 0.712
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.702
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.712
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.712
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.717
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.712
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.712
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.717
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.717
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.712
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.712
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.712
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.717
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.717
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.717
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.706
Rbm46 Mus musculus ENSMUSG00000033882 I 0.712
Rbm47 Mus musculus ENSMUSG00000070780 I 0.712
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.727
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.707
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.712
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.717
RBM47 Oryzias latipes ENSORLG00000005847 I 0.717
A1CF Oryzias latipes ENSORLG00000013342 I 0.701
RBM47 Procavia capensis ENSPCAG00000011879 I 0.712
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.704
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.717
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.712
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.717
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.712
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.717
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.712
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.717
RBM47 Sorex araneus ENSSARG00000001735 I 0.712
RBM46 Sorex araneus ENSSARG00000006520 I 0.717
RBM47 Sus scrofa ENSSSCG00000008796 I 0.712
RBM46 Sus scrofa ENSSSCG00000008994 I 0.717
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.712
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.712
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.712
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.712
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.712
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.707
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.712
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.788
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.754
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.759
e_gw1.60.73.1 Lottia gigantea e_gw1.60.73.1 N 0.707
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.740
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.740